Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311H03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0872 + 6687849-6687864,6689622-6690235,6690927-6691478           28   4.0  
03_03_0067 + 14230211-14231506                                         28   5.2  
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281...    27   9.1  

>06_01_0872 + 6687849-6687864,6689622-6690235,6690927-6691478
          Length = 393

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 503 VELHQLPFSFFYLFPFVCDQYHLKILYLHFLKLCFLVCHIA 381
           + L+   FS   +FP +      + ++ H L +CF++C +A
Sbjct: 182 MSLYAFCFSGHAVFPMIYTGMRNRRMFPHVLLICFIICTLA 222


>03_03_0067 + 14230211-14231506
          Length = 431

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 230 PLQVHYCCHWSI-PSASRVFLSV 165
           P+ +H C HW + PS++R  LSV
Sbjct: 226 PVSLHGCLHWLVAPSSARPLLSV 248


>10_01_0266 +
           2816391-2818898,2818934-2819162,2819369-2819444,
           2819776-2819830,2822042-2822110,2823077-2823321,
           2824029-2824065
          Length = 1072

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 5   NSLNISFIYPNCNYKIIIVASNNYPKRMLDGW 100
           NS +  F +    Y +II   N+YP+ +LD +
Sbjct: 828 NSRSFKFTHKKFGYWMIIEMLNSYPRELLDNF 859


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,914,616
Number of Sequences: 37544
Number of extensions: 209898
Number of successful extensions: 483
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)