Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311H03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   4.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   4.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   4.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.8  

>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 381 SSLSNKKLRSRETFNN 334
           SSLSNK + +   +NN
Sbjct: 83  SSLSNKTIHNNNNYNN 98


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 381 SSLSNKKLRSRETFNN 334
           SSLSNK + +   +NN
Sbjct: 83  SSLSNKTIHNNNNYNN 98


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 381 SSLSNKKLRSRETFNN 334
           SSLSNK + +   +NN
Sbjct: 316 SSLSNKTIHNNNNYNN 331


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 381 SSLSNKKLRSRETFNN 334
           SSLSNK + +   +NN
Sbjct: 305 SSLSNKTIHNNNNYNN 320


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 342 RFLGTVVFCWIDYCNMTNQK 401
           R L TVV   +D C+ T  K
Sbjct: 177 RLLATVVQAHLDTCDFTRDK 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,498
Number of Sequences: 438
Number of extensions: 2653
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)