Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311H01f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    29   0.033
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    28   0.058
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    28   0.058
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   0.71 
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    24   0.71 
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   1.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.8  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   6.6  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 28.7 bits (61), Expect = 0.033
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 312 PRFDEGRPVTFGTVDDEGRIVAYPDYSWHEDQGQNCGGLTSVFRVAIDECN 464
           P+  E  P T  + D   RI A     WHE   +    L SVFR+  D+C+
Sbjct: 283 PQITELEPETIESQDAITRIYAIATM-WHETPEEMMEFLKSVFRLDQDQCS 332


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 27.9 bits (59), Expect = 0.058
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 312 PRFDEGRPVTFGTVDDEGRIVAYPDYSWHEDQGQNCGGLTSVFRVAIDECN 464
           P+  E  P T  + D   RI A     WHE   +    L SVFR+  D+C+
Sbjct: 516 PQITELEPETIESQDAITRIYACGTM-WHETPEEMMEFLKSVFRLDQDQCS 565


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 27.9 bits (59), Expect = 0.058
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 312 PRFDEGRPVTFGTVDDEGRIVAYPDYSWHEDQGQNCGGLTSVFRVAIDECN 464
           P+  E  P T  + D   RI A     WHE   +    L SVFR+  D+C+
Sbjct: 516 PQITELEPETIESQDAITRIYACGTM-WHETPEEMMEFLKSVFRLDQDQCS 565


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 0.71
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 160 GNGRNWSSCFRTKKLGHMH*RNDF 231
           GN ++W+  F+ K  G+   R DF
Sbjct: 190 GNAKHWTGIFQKKWRGYEDFRRDF 213


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 24.2 bits (50), Expect = 0.71
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -3

Query: 369 YVPRRLQFQMSQDVLRQNEVLSQISAIFYL 280
           +VPRR+ F + ++  R+N +   +  +F +
Sbjct: 331 FVPRRVPFDLFENKKRKNNIKLYVRRVFIM 360


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -2

Query: 370 IRPSSSTVPNVTGRPSSKRGIVTNIRDFLPDLC 272
           + P    V  VT +PSS +      RD    LC
Sbjct: 390 VEPVPQPVEEVTQKPSSTKAPAPPSRDLTTTLC 422


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = -3

Query: 198 LRSETRTPVPPIASPRGDYSSLRDRANSTPN----NMTVEKT 85
           ++S+   P P I SP    +S     ++ PN    NM +++T
Sbjct: 412 MQSQIINPQPQITSPSNTNTSTSSTNSNKPNSSDLNMLIKET 453


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 124 GQQHAKQYDSRKNR 83
           GQQH  Q DSR  +
Sbjct: 23  GQQHGPQSDSRNQQ 36


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,789
Number of Sequences: 336
Number of extensions: 3182
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)