Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311H01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1584 + 27907345-27907357,27907693-27908039,27908202-279083... 32 0.24
08_02_0719 + 20388246-20390756,20391159-20391263 30 0.98
06_01_0898 + 6908826-6908974,6909059-6909428,6909510-6909929,691... 30 1.3
07_03_0406 + 17785046-17785408,17786411-17786479,17786764-177868... 29 2.3
01_05_0120 - 18349131-18349880,18349972-18350259,18350383-18350568 29 2.3
11_06_0099 + 20070925-20073867 29 3.0
10_01_0052 - 750902-751697,753077-753603,753696-753913,754012-75... 28 5.2
11_06_0147 - 20626854-20627181,20627267-20627377,20627461-206278... 27 6.9
05_01_0220 + 1644608-1645036,1645147-1645578,1645939-1646475 27 6.9
03_05_0964 - 29254947-29256183,29256275-29256381 27 6.9
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221... 27 6.9
06_01_0518 + 3750996-3751424 27 9.1
04_01_0614 + 8049199-8049579 27 9.1
01_01_0051 + 389051-389623 27 9.1
>07_03_1584 +
27907345-27907357,27907693-27908039,27908202-27908319,
27908653-27908705,27908808-27908978,27909447-27909643,
27909729-27909807,27909954-27909992,27910202-27910321,
27910417-27910518,27910654-27910737,27910832-27911074,
27911156-27911281,27911365-27911439,27911534-27911605,
27911807-27911926,27912075-27912172,27912643-27912802,
27912867-27912980,27913029-27913121,27913122-27913319,
27913404-27913497,27914032-27914192
Length = 958
Score = 32.3 bits (70), Expect = 0.24
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +3
Query: 198 EARSYALEKRFYVPGSSVPIDVDVQHRSGKKSRIFVTIPRFDEGRPVTFGTVDDEGRIVA 377
EA +YA +K+ + G +PI VD R+ + ++ T+ R + D G+
Sbjct: 444 EAAAYARKKKVILKGD-LPIGVD---RNSVDTWVYPTLFRMNTATGAPPDYFDKNGQNWG 499
Query: 378 YPDYSWHEDQGQNCG 422
+P Y+W E N G
Sbjct: 500 FPTYNWEEMSKDNYG 514
>08_02_0719 + 20388246-20390756,20391159-20391263
Length = 871
Score = 30.3 bits (65), Expect = 0.98
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 360 RRLQFQMSQDVLRQNEVLSQISAIFYLTYVARRHQLAPRTRVRKIVSL 217
RR+ Q+ +D RQN LS++ +F + +L T K++S+
Sbjct: 525 RRMSIQIEEDDFRQNVSLSKLQTLFISNKIPHVPKLLSSTTALKVLSM 572
>06_01_0898 +
6908826-6908974,6909059-6909428,6909510-6909929,
6910017-6910315,6910390-6910648,6910732-6911041,
6911126-6911251,6911373-6911417,6911652-6911702,
6912041-6912153
Length = 713
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = -3
Query: 429 LVLRSFAPGLRAKNNPDRQ---RYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVARRH 259
+V R+ PG+R N ++ ++ PR +Q + VL EV+ ++ A TY+
Sbjct: 402 VVERTVPPGVRLFNRSEQAANTQWTPR-VQKYIDNWVLATEEVIDEVRAHTEATYLRYLR 460
Query: 258 QLAPRTRVR 232
PRTR R
Sbjct: 461 WYLPRTRTR 469
>07_03_0406 +
17785046-17785408,17786411-17786479,17786764-17786868,
17787297-17787346,17787363-17787489,17788084-17788221,
17788863-17788940,17789141-17789218,17789318-17789386,
17789720-17789803,17789895-17789981,17790364-17790459,
17790541-17790615,17790762-17790888,17791027-17791142
Length = 553
Score = 29.1 bits (62), Expect = 2.3
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = +3
Query: 138 KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVP-GSSVPIDVDVQHRSGKKSRIFVTIP 314
K L+V + ++ + P + A S F+V G S P +Q + + SR F+
Sbjct: 169 KVELKVSKISVAVDNIIPGKHASSAFFWFHFFVQIGESDPTSFPIQKK--RASREFLRTV 226
Query: 315 RFDEGRPVTFGTVDDEGRIVAYPDYSWHEDQG 410
R TFG V +AY + + +D G
Sbjct: 227 AHLRPRTNTFGAVARVRNALAYATHKFFQDNG 258
>01_05_0120 - 18349131-18349880,18349972-18350259,18350383-18350568
Length = 407
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -2
Query: 439 NTEVSPPQFCPWSSCQE*SG*ATIRPSSSTVPNVTGRPSSKRGIVTNIRDFLP 281
N + ++CP C E G T+ + T N+TG ++ + D LP
Sbjct: 314 NPVIVDQKYCPEKDCPEKKGSKTVTIKNVTFRNITGTSNTPEAVSLLCSDQLP 366
>11_06_0099 + 20070925-20073867
Length = 980
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 15 HINLPEDPQLLNAFKLEMSY 74
H+N+ DPQ L FKLE SY
Sbjct: 450 HLNIVMDPQWLPPFKLEKSY 469
>10_01_0052 -
750902-751697,753077-753603,753696-753913,754012-754114,
754337-754393
Length = 566
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 472 QRRLHSSIATLNTEVSPPQFCPWSSC 395
Q R A L+ E+SP Q+ PW C
Sbjct: 300 QFRFFDKAAILSDEISPAQWSPWRLC 325
>11_06_0147 -
20626854-20627181,20627267-20627377,20627461-20627846,
20627949-20628057,20629375-20629421,20629506-20629646
Length = 373
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -2
Query: 220 SNAYDRASSFGNTNSSSAHCLTT 152
+N A+S GNT++SSA C+TT
Sbjct: 347 NNPTTAATSSGNTSASSAPCVTT 369
>05_01_0220 + 1644608-1645036,1645147-1645578,1645939-1646475
Length = 465
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 210 MTELLRSETRTPVPPIASPRGDYSSLRDRANSTPNNMTVEKTARF 76
+T L + T TP PP ++P ++ R S + VE AR+
Sbjct: 29 VTACLATPTPTPPPPTSAPLAPAAAAARRELSAASRAVVEDEARY 73
>03_05_0964 - 29254947-29256183,29256275-29256381
Length = 447
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 159 RQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDV 263
R+W +FP+E+ +S+ + F GS+ +D+
Sbjct: 174 RRWGTRRPIFPSEKPKSFTAHQTFSFQGSAYWVDL 208
>03_05_0211 -
22020515-22020687,22020801-22020831,22022060-22022169,
22022715-22023102,22023344-22023397,22023739-22023849,
22023956-22024015,22024618-22024694,22026155-22026188,
22026267-22027235
Length = 668
Score = 27.5 bits (58), Expect = 6.9
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Frame = +3
Query: 183 VFPNEEARSYALEKRFYVPGSSVPIDVDVQHR-SGKKSRIFVTIPRFDEGRPVTFGTVDD 359
V E R++ +EK P +P V HR S KK + GR TVD
Sbjct: 310 VIEKEPNRNFVVEKGRGTPLKDIP---SVAHRISRKKPADLKFLHNVLFGRKGK--TVDF 364
Query: 360 EGRIVAYPDYSWHE-DQGQNCGGLTSVFRVAIDECNRL-WIM 479
+G I+ + + WHE D+ Q + + D L WI+
Sbjct: 365 KGHILQFSGFVWHESDEKQRAKAKEKLDKCVKDMLLELCWIL 406
>06_01_0518 + 3750996-3751424
Length = 142
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 226 RFSNAYDRASSFGNTNSSSAHCLTTRRL 143
R SNAY+ +S N+ + HC R L
Sbjct: 17 RVSNAYNSGASSSNSTGDTKHCRIMREL 44
>04_01_0614 + 8049199-8049579
Length = 126
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -3
Query: 177 PVPPIASPRGDYSSLRDRANSTPNNMTVEKTARFRTT 67
P P+ S SSLRDR + NN TA TT
Sbjct: 43 PTAPLESTVISTSSLRDRESRDKNNAAATATAAASTT 79
>01_01_0051 + 389051-389623
Length = 190
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/80 (27%), Positives = 39/80 (48%)
Frame = -2
Query: 268 TSTSIGTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPRPGQQHAKQYDSRK 89
+S+S + + + S++ +SS +++SSS L RR P P Q+ K+
Sbjct: 101 SSSSESSSSSSSSSSESSSSSSSSSSESSSSSSDDDLARRRQQRNPSPPPQYKKEARRSP 160
Query: 88 NRSIPYDISSLKAFNS*GSS 29
+ S P S+ + +S GSS
Sbjct: 161 SPSPPSSSSTSSSSSSSGSS 180
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,490,353
Number of Sequences: 37544
Number of extensions: 349968
Number of successful extensions: 927
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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