Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311G10f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|... 43 2e-05
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 29 0.56
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 29 0.56
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar... 29 0.56
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 27 1.3
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 27 1.7
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 25 6.8
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 6.8
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 25 6.8
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 25 6.8
>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 43.2 bits (97), Expect = 2e-05
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -3
Query: 516 MSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 409
+SW PD A +K KM+YSSS D L+++ G+ IQA
Sbjct: 84 ISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQA 119
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 28.7 bits (61), Expect = 0.56
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = -3
Query: 486 KKKMLYSSSFDALKKSLVGVQKYIQADRPLGKRLRRPSKRSSAP 355
K+K++ +++ A+ S+ Q +PL +RL++ S R S+P
Sbjct: 390 KRKLVEATAQPAISTSVAEGASLAQVSKPLPERLQKDSMRRSSP 433
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 28.7 bits (61), Expect = 0.56
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -3
Query: 519 LMSWCPDTAKVKKKMLYSSS 460
L+S+ P+ A V++KMLY+SS
Sbjct: 83 LISYVPENANVRRKMLYASS 102
>SPCC1223.02 |nmt1|thi3|no message in thiamine
Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 28.7 bits (61), Expect = 0.56
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 504 PDTAKVKKKMLYSSSFDALKKSLVGVQKYIQADRPLGKRLRR 379
PD K + ++S++ D LK + ++YI R +G L R
Sbjct: 213 PDKIKAFLRAIHSATLDMLKDPVQTYKEYIHFKREMGSELHR 254
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 446 KSPLSEFRSTSKRTDLSGSVSGGRRREAPRHRSPINSIYTRARDE 312
K P+ + R + KR + S ++ +A R RSP I DE
Sbjct: 149 KEPIQDLRKSHKRKSVEKSSVPNKKHKAERKRSPSPKIEILEDDE 193
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 514 VVVPGHRQGQEEDVVL*LVRRSEKVPCRSSEVHPSGPTSREASQE 380
VV+ GH +G E+D++ V R KV + P+ T+ SQ+
Sbjct: 42 VVITGHSKGSEDDLIS-FVWRKVKVRLMNISYSPASVTAVVKSQD 85
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 141 CREA-VMRFGLKGGAAVVTIWVAHLCC 64
CR A +R G+K G ++ I V +CC
Sbjct: 7 CRSANTLRKGIKNGKLILKIIVNDVCC 33
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -1
Query: 365 APRHRSPINSIYTRARDETEPALRHSCPDDTRPRHH*PL 249
APR R P ++ T A E P + P TR PL
Sbjct: 24 APRKREPARTVSTPAFMEPAPVSKKPLPPPTRRLPRKPL 62
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 350 SPINSIYTRARDETEPALRHSCPDDTRPRHH*PLSIITKEN 228
SP+++ D ++PAL S P+H LS KEN
Sbjct: 391 SPLSTPLKAQFDPSKPALNRSIDHQKTPQHKRYLSTEFKEN 431
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 167 YPRGLTRGPTTSKINHINTIRFPL**Y*AASGVV 268
YP LT TT K H +IRF Y ASG+V
Sbjct: 14 YPEALT---TTLKHGHATSIRFSTNGYHLASGLV 44
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,916
Number of Sequences: 5004
Number of extensions: 41753
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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