Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311G10f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013) 38 0.004
SB_55463| Best HMM Match : OPA3 (HMM E-Value=0) 34 0.062
SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_11461| Best HMM Match : NHL (HMM E-Value=0) 30 1.3
SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20) 29 1.8
SB_7256| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_56393| Best HMM Match : CTF_NFI (HMM E-Value=0.75) 29 2.3
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_35345| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_39636| Best HMM Match : WSC (HMM E-Value=0.34) 29 3.1
SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_25705| Best HMM Match : PH (HMM E-Value=2e-17) 28 5.4
SB_11273| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12) 27 7.1
SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41) 27 7.1
SB_35197| Best HMM Match : SAP (HMM E-Value=3.2) 27 9.4
SB_33346| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_10026| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_53807| Best HMM Match : MCM (HMM E-Value=0) 27 9.4
SB_51303| Best HMM Match : WD40 (HMM E-Value=3.5e-40) 27 9.4
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)
Length = 310
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = -3
Query: 519 LMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 409
L C D A +KKKML S+++ LKK G++KY +A
Sbjct: 257 LFDRCSDEAPIKKKMLAGSTWEYLKKKFDGLKKYFEA 293
>SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)
Length = 387
Score = 34.3 bits (75), Expect = 0.062
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -3
Query: 519 LMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQ 412
L+ WCPD ++K +M+ +++F +KK G K ++
Sbjct: 332 LIFWCPDNCEIKSRMVSAATFQDVKKKCPGGAKCLE 367
>SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 31.9 bits (69), Expect = 0.33
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 519 LMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQ 412
L+ WCPD +K KM+ +++F + K G K ++
Sbjct: 85 LIFWCPDNCGIKNKMVSAATFKEVMKKCPGGAKCLE 120
>SB_11461| Best HMM Match : NHL (HMM E-Value=0)
Length = 819
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = -2
Query: 331 THELA--TKPNPLSDTPALTTRGHDTTSRLVLLQRKTNSINMIDF 203
T EL+ T+ NPL TPAL++RG T R+ + + N+ IDF
Sbjct: 296 TQELSDTTRLNPL--TPALSSRGQRGTPRIPYRESQQNAEGNIDF 338
>SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 510 WCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQ 412
WC D A +KK+M+ +++ + LK V V+K Q
Sbjct: 98 WCSDNAPIKKRMVSAATNELLKTKFV-VKKVFQ 129
>SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)
Length = 151
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 516 MSWCPDTAKVKKKMLYSSSFDALKK 442
+SWC D A ++KKM +S+ D ++K
Sbjct: 96 ISWCSDKAPIEKKMKLASTQDYVRK 120
>SB_7256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 407 TDLSGSVSGGRRREAPRHRSPI 342
TD + +GGRRRE P R+P+
Sbjct: 40 TDRGAAAAGGRRREGPTARAPV 61
>SB_56393| Best HMM Match : CTF_NFI (HMM E-Value=0.75)
Length = 886
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 401 LSGSVSGGRRREAPRHRSPINSIYTRARDETE 306
+SG V +R +P RS S ++RDETE
Sbjct: 60 VSGQVCNNKREASPNSRSGAGSARKKSRDETE 91
>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +1
Query: 76 CHPYSY--NGCPALQTETHYCFTAEIGRGRWYLPARTHKRSYH 198
CHP N C +T+ + C + + WY P++T YH
Sbjct: 437 CHPTKTQANWCHPTKTQANLCHPTKT-QANWYHPSKTQANWYH 478
>SB_35345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 401 LSGSVSGGRRREAPRHRSPINSIYTRARDETE 306
+SG V +R +P RS S ++RDETE
Sbjct: 65 VSGQVCNNKREASPNSRSGAGSARKKSRDETE 96
>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/61 (32%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = -2
Query: 331 THELATKPNPLSDTPALTTRGHDTTSRLVLLQRKT-NSINMIDFTGGRTSCESARVGTTA 155
THE L DT T HDTT L T N + D TG T T
Sbjct: 515 THETTRHDTHLHDTTENDTHPHDTTGNDTYLHDTTENDTHPHDTTGNDTQLHDTTGNKTR 574
Query: 154 P 152
P
Sbjct: 575 P 575
>SB_39636| Best HMM Match : WSC (HMM E-Value=0.34)
Length = 390
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 184 CESARVGTTAPCLFLP*SSNAFRFEGRGSRCNYMGGTFML 65
C+S TT+ C++L NA RC +GGTF L
Sbjct: 207 CKSGWHSTTSRCIYL--MPNATYPGSTAERCRLLGGTFFL 244
>SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 510
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 401 LSGSVSGGRRREAPRHRSPINSIYTRARDETE 306
+SG + +R +P RS S ++RDETE
Sbjct: 60 VSGQICNNKREASPNSRSGAGSARKKSRDETE 91
>SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)
Length = 409
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 385 QEAVEEKLRATDRQ*TAFTHEL--ATKPNPLSDTPALTTRGH 266
+E K+ AT+ AFTH+L KP +SD P + +G+
Sbjct: 22 EETPPIKIEATNHHAKAFTHDLENLAKPLKVSDVPNVFLQGY 63
>SB_11273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -1
Query: 467 LARSTL*KSPLSEFRSTSKRTDLSGSVSGGRRREAPRHRSPINSI--YTR 324
LARS S S S+++RT LS + R+ P+ S + + YTR
Sbjct: 25 LARSVTVNSMTSSVLSSARRTPLSQNPQSATRKSLPQSYSAVQCVKGYTR 74
>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
Length = 872
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 90 LQRLPRPSNRNALLLHGRNRQGA 158
+QR P P+ RN++ LHG Q A
Sbjct: 30 VQRRPEPTPRNSIFLHGLRAQTA 52
>SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)
Length = 686
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -1
Query: 425 RSTSKRTDLSGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCPDDTRPRH 261
R T+ R + + R+AP HR+P + E+ PA +H+ T R+
Sbjct: 407 RPTTSRPSHTSATEYYPDRQAPGHRTPDRHTHNNHAPESYPAAQHTPEHLTNTRN 461
>SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)
Length = 323
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +3
Query: 195 PPVKSIILILFVFLCNNTKRLVVSWPRVVRAGVSESGFGFVASSCVNAVYWRSVARS 365
P + II+I+++ + NNT L SW V A + C WR +AR+
Sbjct: 125 PLIIIIIVIIYIIIINNTGILDRSWAGVQTALKPRANCAMTCQHC-----WRILARN 176
>SB_33346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1074
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -2
Query: 445 KVPCRSSEVHPSGPTSREASQEAVEEKLRATDRQ*TAFTHELATKPNPL 299
K P SS TS+ +Q+ +EE+ T R+ AFT + K PL
Sbjct: 1006 KTPIGSSTNANVKNTSKRKTQQMMEEQSTPTSRKRKAFTPKKLVKRPPL 1054
>SB_10026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -1
Query: 407 TDLSGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCPDDTRPRH 261
+D G+ + G++ P RS + Y+ RD A ++ C D RH
Sbjct: 337 SDEGGTYNSGKQPSDPCQRSADQNPYSTQRDSQPGAGKYPCSDAGCHRH 385
>SB_53807| Best HMM Match : MCM (HMM E-Value=0)
Length = 789
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/59 (22%), Positives = 30/59 (50%)
Frame = +1
Query: 343 IGDRWRGASLRRPPETLPERSVRLDVLLNSDKGLFQSVERARVQHLLLDLGGVRAPRHQ 519
+G ++G+ P + PE R +N ++ L+Q+ ++ ++Q + R PR++
Sbjct: 258 LGPFFQGSDQEVKPGSCPECQSRGPFEINMEQTLYQNYQKIKIQESPSKVAAGRLPRYK 316
>SB_51303| Best HMM Match : WD40 (HMM E-Value=3.5e-40)
Length = 400
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 519 LMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKY 418
L+SW PD ++K++ SFD K V Y
Sbjct: 358 LLSWLPDMERLKEEPKEDKSFDEKIKQAAPVDPY 391
>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 69 INVPPI*LQRLPRPSNRNALLLHGRNRQGAVVPTRADSQEV 191
++VPP L R RP N L + G + + +P + ++++
Sbjct: 299 LSVPPEQLSRNERPKNTTTLFVSGVDTMASKLPVQRSARDI 339
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,212,902
Number of Sequences: 59808
Number of extensions: 353965
Number of successful extensions: 1031
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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