Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311G10f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4) id... 50 1e-06
At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4) id... 50 1e-06
At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1) id... 49 2e-06
At3g46000.1 68416.m04977 actin-depolymerizing factor, putative (... 47 7e-06
At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3) id... 46 1e-05
At1g01750.1 68414.m00094 actin-depolymerizing factor, putative s... 46 2e-05
At4g00680.1 68417.m00093 actin-depolymerizing factor, putative s... 46 2e-05
At5g52360.1 68418.m06497 actin-depolymerizing factor, putative s... 43 1e-04
At4g25590.1 68417.m03687 actin-depolymerizing factor, putative s... 43 1e-04
At3g45990.1 68416.m04976 actin-depolymerizing factor, putative s... 42 3e-04
At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5) id... 38 0.003
At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6) id... 38 0.004
At4g34970.1 68417.m04957 actin-depolymerizing factor, putative s... 36 0.012
At5g55510.1 68418.m06914 mitochondrial import inner membrane tra... 30 1.1
At3g01560.1 68416.m00086 proline-rich family protein contains pr... 29 2.5
At5g02850.1 68418.m00228 hydroxyproline-rich glycoprotein family... 28 4.4
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 28 4.4
At5g28810.1 68418.m03542 hypothetical protein 27 5.8
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)... 27 5.8
At1g64430.1 68414.m07302 expressed protein 27 5.8
>At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 132
Score = 49.6 bits (113), Expect = 1e-06
Identities = 20/39 (51%), Positives = 28/39 (71%)
Frame = -3
Query: 516 MSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQADRP 400
++WCPD AKV+ KM+Y+SS D K+ L G+Q +QA P
Sbjct: 81 IAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDP 119
>At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 139
Score = 49.6 bits (113), Expect = 1e-06
Identities = 20/39 (51%), Positives = 28/39 (71%)
Frame = -3
Query: 516 MSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQADRP 400
++WCPD AKV+ KM+Y+SS D K+ L G+Q +QA P
Sbjct: 88 IAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDP 126
>At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1)
identical to SP|Q39250 Actin-depolymerizing factor 1
(ADF-1) (AtADF1) {Arabidopsis thaliana}
Length = 139
Score = 49.2 bits (112), Expect = 2e-06
Identities = 20/39 (51%), Positives = 28/39 (71%)
Frame = -3
Query: 516 MSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQADRP 400
++WCPD AKV+ KM+Y+SS D K+ L G+Q +QA P
Sbjct: 88 IAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDP 126
>At3g46000.1 68416.m04977 actin-depolymerizing factor, putative
(ADF2) strong similarity to SP|Q9ZSK3
Actin-depolymerizing factor 4 (ADF-4) (AtADF4)
{Arabidopsis thaliana}; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 47.2 bits (107), Expect = 7e-06
Identities = 20/39 (51%), Positives = 28/39 (71%)
Frame = -3
Query: 516 MSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQADRP 400
++W PDTAKV+ KM+Y+SS D K+ L G+Q +QA P
Sbjct: 86 IAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQATDP 124
>At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 139
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = -3
Query: 516 MSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQADRP 400
++W PDTA+V+ KM+Y+SS D K+ L G+Q +QA P
Sbjct: 88 VAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDP 126
>At1g01750.1 68414.m00094 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = -3
Query: 516 MSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQADRP 400
++W PDT++V+ KMLY+SS D K+ L G+Q +QA P
Sbjct: 88 IAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDP 126
>At4g00680.1 68417.m00093 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 45.6 bits (103), Expect = 2e-05
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = -3
Query: 516 MSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQADRP 400
++W PDT++V+ KMLY+SS D K+ + G+Q +QA P
Sbjct: 88 IAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQATDP 126
>At5g52360.1 68418.m06497 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 42.7 bits (96), Expect = 1e-04
Identities = 17/39 (43%), Positives = 28/39 (71%)
Frame = -3
Query: 516 MSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQADRP 400
++W PD+++V+ KM+Y+SS D K+ L G+Q +QA P
Sbjct: 86 IAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDP 124
>At4g25590.1 68417.m03687 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 130
Score = 42.7 bits (96), Expect = 1e-04
Identities = 17/39 (43%), Positives = 28/39 (71%)
Frame = -3
Query: 516 MSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQADRP 400
++W PD+++V+ KM+Y+SS D K+ L G+Q +QA P
Sbjct: 79 IAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDP 117
>At3g45990.1 68416.m04976 actin-depolymerizing factor, putative
similar to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 133
Score = 41.5 bits (93), Expect = 3e-04
Identities = 16/31 (51%), Positives = 24/31 (77%)
Frame = -3
Query: 516 MSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 424
++W P TAK++KKM+YSS+ D K+ L G+Q
Sbjct: 82 IAWSPSTAKMRKKMIYSSTKDRFKRELDGIQ 112
>At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5)
identical to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}
Length = 143
Score = 38.3 bits (85), Expect = 0.003
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = -3
Query: 516 MSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQADRP 400
++W P+ +K++ K+LY++S D L++ L G+ +QA P
Sbjct: 92 IAWSPEASKIRAKILYATSKDGLRRVLEGIHYELQATDP 130
>At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6)
identical to SP|Q9ZSK2 Actin-depolymerizing factor 6
(ADF-6) (AtADF6) {Arabidopsis thaliana}
Length = 146
Score = 37.9 bits (84), Expect = 0.004
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = -3
Query: 513 SWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQADRP 400
+W P T+ ++ K+LYS+S D L + L G+ IQA P
Sbjct: 96 AWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDP 133
>At4g34970.1 68417.m04957 actin-depolymerizing factor, putative
similar to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 130
Score = 36.3 bits (80), Expect = 0.012
Identities = 13/39 (33%), Positives = 27/39 (69%)
Frame = -3
Query: 516 MSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQADRP 400
++W P+ +++++KM+Y++S L++ L GV +QA P
Sbjct: 79 ITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQATDP 117
>At5g55510.1 68418.m06914 mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein
weak similarity to SP|Q99595 Mitochondrial import inner
membrane translocase subunit TIM17 A {Homo sapiens};
contains Pfam profile PF02466: Mitochondrial import
inner membrane translocase subunit Tim17
Length = 186
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -1
Query: 413 KRTDLSGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCPDDTRPR 264
++T L+ SVS ++ +P+H P+ S+ DE + A C T+P+
Sbjct: 129 RQTALAHSVSFRQQTRSPQHDLPLLSLAIPIHDEIKGAFSSFCNSLTKPK 178
>At3g01560.1 68416.m00086 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 511
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 149 AGGGGTYPRGLTRGPTTSKINHINTIRFP 235
+GGG + PR +R P I+ + T+ FP
Sbjct: 441 SGGGSSSPRSESRAPIDDVIDRVTTMGFP 469
>At5g02850.1 68418.m00228 hydroxyproline-rich glycoprotein family
protein
Length = 426
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 370 LRRPPETLPERSVRLDVLLNSDKGLFQS 453
L RPP+ + R+V+LD+L + D + S
Sbjct: 390 LHRPPDVIQVRAVQLDILEDDDSSDYSS 417
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 27.9 bits (59), Expect = 4.4
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +3
Query: 57 DIYNIN-VPPI*LQRLPRPSNRNALLLHGRNRQGAVVPTRADSQEVLPPVKSIILILFVF 233
DI I P I + L S++ L+ R + D + L P K ++ +LF F
Sbjct: 165 DIKEIRFTPKIEAKDLKFKSDQALKLMESGYRVKCLAVPDKDKHKELEPEK-LLELLFRF 223
Query: 234 LCNNTKRLVVSWPRVVRAG 290
C LV SWP R G
Sbjct: 224 TCFIGDALVESWPEADRKG 242
>At5g28810.1 68418.m03542 hypothetical protein
Length = 560
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 288 GVSES-GFGFVASSCVNAVYWRSVARSFSSTA 380
G+ E+ GFG +CV + WRS + F+ TA
Sbjct: 185 GIGEACGFGKTTLTCVPLLDWRSSRKRFNFTA 216
>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
identical to SP|O65607 DNA mismatch repair protein MSH3
(AtMsh3) {Arabidopsis thaliana}
Length = 1081
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +3
Query: 198 PVKSIILILFVFLCNNTKRLVVSWPRVVRAGVSESGFGFVASSCVNAVYWRSVARSFS 371
PV S + + +V + N+TK+ + P + AG+ E + VN W S +SFS
Sbjct: 679 PVDSKVPMNWVKV-NSTKKTIRYHPPEIVAGLDELALATEHLAIVNRASWDSFLKSFS 735
>At1g64430.1 68414.m07302 expressed protein
Length = 559
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 275 CRQGRSVGERVRFRRELVCKCCLLAIGGAE 364
CR G S E V F + + C CL+AI A+
Sbjct: 180 CRVGISPAEEVPFGKIVRCPSCLIAIAVAQ 209
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,840,696
Number of Sequences: 28952
Number of extensions: 249861
Number of successful extensions: 708
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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