Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311G08f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0D8G9 Cluster: Chromosome undetermined scaffold_41, wh...    33   5.2  
UniRef50_Q00610 Cluster: Clathrin heavy chain 1; n=54; Eukaryota...    33   5.2  
UniRef50_UPI0000E49767 Cluster: PREDICTED: similar to fibropelli...    32   6.9  
UniRef50_Q4S928 Cluster: Chromosome undetermined SCAF14702, whol...    32   6.9  

>UniRef50_A0D8G9 Cluster: Chromosome undetermined scaffold_41, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_41,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 889

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -2

Query: 490 ILYTLTITRFEIKKKIIFKTWRLVKNNPI*RFNPQSYDRKLN 365
           ++  + I + +I K IIFK +RL K NP   F  QS+ R  N
Sbjct: 815 VMIVVIIFKKQIVKFIIFKIFRLRKKNPQTEFREQSFFRSYN 856


>UniRef50_Q00610 Cluster: Clathrin heavy chain 1; n=54;
           Eukaryota|Rep: Clathrin heavy chain 1 - Homo sapiens
           (Human)
          Length = 1675

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 13/15 (86%), Positives = 15/15 (100%)
 Frame = +3

Query: 111 MAQVLPIRFQEHLQV 155
           MAQ+LPIRFQEHLQ+
Sbjct: 1   MAQILPIRFQEHLQL 15


>UniRef50_UPI0000E49767 Cluster: PREDICTED: similar to fibropellin
           Ia; n=3; Strongylocentrotus purpuratus|Rep: PREDICTED:
           similar to fibropellin Ia - Strongylocentrotus
           purpuratus
          Length = 686

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 184 GKCNKLMGVLTCKCS*NRIGNTCAMFIDHSVLH 86
           GKC    G  TC+C     GN C + ID  V H
Sbjct: 258 GKCINQWGTFTCQCQLGFTGNRCEINIDDCVNH 290


>UniRef50_Q4S928 Cluster: Chromosome undetermined SCAF14702, whole
           genome shotgun sequence; n=4; Eumetazoa|Rep: Chromosome
           undetermined SCAF14702, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 1909

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = +3

Query: 111 MAQVLPIRFQEHLQ 152
           MAQ+LPIRFQEHLQ
Sbjct: 1   MAQILPIRFQEHLQ 14


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 510,777,384
Number of Sequences: 1657284
Number of extensions: 10064936
Number of successful extensions: 18530
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18528
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)