Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311G08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    31   0.14 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.2  
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    25   6.8  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   6.8  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    25   6.8  

>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -1

Query: 377 SQIEFGTNQYLLASTRLARRGWTLSK**KKHSLPYIFLINSLKSFTTHP*YTFL 216
           S ++  T ++    + L R    L++     S   I L  SLKSFTTHP Y+F+
Sbjct: 220 SWLDLSTGEFFTQDSNLQRLAGDLTR----ISPREIVLDESLKSFTTHPIYSFI 269


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -2

Query: 439  FKTWRLVKNNPI*RFNPQSYDRKLNLEQINTYWLQLDLHVGG 314
            FK ++L+KNNP   +  Q +D K  L Q+N Y + +   +GG
Sbjct: 1466 FKQYQLLKNNPF-WWTSQRHDGK--LWQLNNYRVDVIQALGG 1504


>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 133 RIGNTCAMFIDHSVLHKPKTKKRAT 59
           ++GN   M + H ++H P T+ RAT
Sbjct: 12  KVGN---MLLQHRIVHAPMTRLRAT 33


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 111 MAQVLPIRFQEHLQVST 161
           MAQ LPIRF E LQ+++
Sbjct: 1   MAQQLPIRFSEVLQLAS 17


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 136 NRIGNTCAMFIDHSVLHKPKTKKRATLLKSRTL 38
           N I N C ++     +H+P T K+A + + + L
Sbjct: 190 NPICNACGLYYKIHGVHRPVTMKKAIIKRRKRL 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,246
Number of Sequences: 5004
Number of extensions: 46376
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)