Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311G08f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_13194| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_7343| Best HMM Match : EGF (HMM E-Value=0)                          28   5.4  
SB_39697| Best HMM Match : ER_lumen_recept (HMM E-Value=1.4)           27   9.4  
SB_34350| Best HMM Match : Peptidase_M22 (HMM E-Value=1.9)             27   9.4  
SB_46360| Best HMM Match : EGF (HMM E-Value=0)                         27   9.4  
SB_6077| Best HMM Match : EGF (HMM E-Value=0)                          27   9.4  

>SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 196 KEMIGKCNKLMGVLTCKCS*NRIGNTCAMFIDHSVLHKPKTKKRAT 59
           K  +  C+ L   L   C+   +G T  MFI+H  +H+P+T+   T
Sbjct: 119 KSSLDDCSTLWLTLRVHCTLRCLG-TAYMFINHVHVHQPRTRSSTT 163


>SB_13194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 308 VSTPYVQVELKPVGIDLFQI 367
           V+ PY+ V LKP GI LF I
Sbjct: 261 VTVPYIDVTLKPTGIPLFVI 280


>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1233

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 178  CNKLMGVLTCKCS*NRIGNTCAMFIDHSV 92
            C +  GV+TC C   R G TC+  ++  V
Sbjct: 1020 CREKQGVVTCDCPLGRTGLTCSQKLNIQV 1048


>SB_39697| Best HMM Match : ER_lumen_recept (HMM E-Value=1.4)
          Length = 151

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 4/29 (13%)
 Frame = -2

Query: 364 LEQINTYWL----QLDLHVGGGHCLSNEK 290
           L Q+NT+ +    QLD+HV GG+ ++N K
Sbjct: 82  LPQVNTFAMYILEQLDMHVFGGNAMTNLK 110


>SB_34350| Best HMM Match : Peptidase_M22 (HMM E-Value=1.9)
          Length = 180

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 429 QVLNIIFFLISNLVIVNV-YNIGICGFCSKRI 521
           Q+L +++ +     IV + YN G CG+  KR+
Sbjct: 23  QLLEVLYDVKKEAAIVTLQYNAGYCGYAGKRL 54


>SB_46360| Best HMM Match : EGF (HMM E-Value=0)
          Length = 352

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = -2

Query: 184 GKCNKLMGVLTCKCS*NRIGNTCAMFIDHSVLH 86
           G C  L+   TC C     G TCA  ID    H
Sbjct: 137 GTCQDLVADFTCHCYPGFTGETCATPIDLCEAH 169


>SB_6077| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1165

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = -2

Query: 184  GKCNKLMGVLTCKCS*NRIGNTCAMFIDHSVLH 86
            G C  L+   TC C     G TCA  ID    H
Sbjct: 950  GTCQDLVADFTCHCYPGFTGETCATPIDLCEAH 982


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,757,217
Number of Sequences: 59808
Number of extensions: 311878
Number of successful extensions: 669
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)