Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311G08f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D21260-1|BAA04801.2| 1685|Homo sapiens KIAA0034 protein.               33   0.80 
BC054489-1|AAH54489.1| 1675|Homo sapiens clathrin, heavy chain (...    33   0.80 
BC051800-1|AAH51800.1| 1639|Homo sapiens CLTC protein protein.         33   0.80 
X95486-1|CAA64752.1| 1640|Homo sapiens clathrin heavy chain poly...    31   3.2  
U60803-1|AAB40909.1| 1569|Homo sapiens clathrin heavy chain 2 pr...    31   3.2  
U60802-1|AAB40908.1| 1626|Homo sapiens clathrin heavy chain 2 pr...    31   3.2  
U41763-1|AAC50494.1| 1640|Homo sapiens muscle clathrin heavy cha...    31   3.2  

>D21260-1|BAA04801.2| 1685|Homo sapiens KIAA0034 protein.
          Length = 1685

 Score = 32.7 bits (71), Expect = 0.80
 Identities = 13/15 (86%), Positives = 15/15 (100%)
 Frame = +3

Query: 111 MAQVLPIRFQEHLQV 155
           MAQ+LPIRFQEHLQ+
Sbjct: 11  MAQILPIRFQEHLQL 25


>BC054489-1|AAH54489.1| 1675|Homo sapiens clathrin, heavy chain (Hc)
           protein.
          Length = 1675

 Score = 32.7 bits (71), Expect = 0.80
 Identities = 13/15 (86%), Positives = 15/15 (100%)
 Frame = +3

Query: 111 MAQVLPIRFQEHLQV 155
           MAQ+LPIRFQEHLQ+
Sbjct: 1   MAQILPIRFQEHLQL 15


>BC051800-1|AAH51800.1| 1639|Homo sapiens CLTC protein protein.
          Length = 1639

 Score = 32.7 bits (71), Expect = 0.80
 Identities = 13/15 (86%), Positives = 15/15 (100%)
 Frame = +3

Query: 111 MAQVLPIRFQEHLQV 155
           MAQ+LPIRFQEHLQ+
Sbjct: 1   MAQILPIRFQEHLQL 15


>X95486-1|CAA64752.1| 1640|Homo sapiens clathrin heavy chain
           polypeptide protein.
          Length = 1640

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +3

Query: 111 MAQVLPIRFQEHLQV 155
           MAQ+LP+RFQEH Q+
Sbjct: 1   MAQILPVRFQEHFQL 15


>U60803-1|AAB40909.1| 1569|Homo sapiens clathrin heavy chain 2
           protein.
          Length = 1569

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +3

Query: 111 MAQVLPIRFQEHLQV 155
           MAQ+LP+RFQEH Q+
Sbjct: 1   MAQILPVRFQEHFQL 15


>U60802-1|AAB40908.1| 1626|Homo sapiens clathrin heavy chain 2
           protein.
          Length = 1626

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +3

Query: 111 MAQVLPIRFQEHLQV 155
           MAQ+LP+RFQEH Q+
Sbjct: 1   MAQILPVRFQEHFQL 15


>U41763-1|AAC50494.1| 1640|Homo sapiens muscle clathrin heavy chain
           protein.
          Length = 1640

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +3

Query: 111 MAQVLPIRFQEHLQV 155
           MAQ+LP+RFQEH Q+
Sbjct: 1   MAQILPVRFQEHFQL 15


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,385,306
Number of Sequences: 237096
Number of extensions: 1582437
Number of successful extensions: 2180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2180
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)