Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311G08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   1.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   5.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   5.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.8  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   7.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.7  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 417 FTKRQVLNIIFFLISNLVIVNVY 485
           F   ++  IIFFLI  L+I+ VY
Sbjct: 210 FPLYELSTIIFFLIPMLIILVVY 232


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -3

Query: 366 IWNKSIPTGFNSTCT 322
           +W + +P GF ++C+
Sbjct: 184 VWGRFVPEGFLTSCS 198


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
 Frame = -2

Query: 175 NKLMGVLTC--KCS*NRIGNTCA----MFIDHSVLHKPKTKKRATLLKSRTLKR*HKSI 17
           N  + V  C  KC   R    CA    ++ +H  LH+      ++L KSR ++  H  I
Sbjct: 98  NSTIAVCVCMRKCP-RRHRPVCASNGKIYANHCELHRAACHSGSSLTKSRLMRCLHHDI 155


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 363 WNKSIPTGFNST 328
           WNK I +GF ST
Sbjct: 289 WNKPINSGFYST 300


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 363 WNKSIPTGFNST 328
           WNK I +GF ST
Sbjct: 289 WNKPINSGFYST 300


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 421 VKNNPI*RFNPQSYDRKLNLEQINTY 344
           + NN I    P ++  K+NL +++ Y
Sbjct: 624 INNNYINLVRPNTFTDKVNLTRVDMY 649


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 88  VGRSDQ*TWRKYYRYGFKNIYR*VRPSVYCIYRSFPF 198
           VG  D  +WR  +R  + ++    + SV  + R  PF
Sbjct: 139 VGVIDFESWRPIFRQNWASLQPYKKLSVEVVRREHPF 175


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 385 SYDRKLNLEQINTYWLQLDLHVGGGHCLSNE 293
           S   ++N+E++   + QL+ + G G  L  E
Sbjct: 491 SKSSRINIERMKQVYQQLNKYRGNGVSLKGE 521


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,948
Number of Sequences: 438
Number of extensions: 3168
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)