Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311G08f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g32775.1 68418.m03902 hypothetical protein                          28   3.3  
At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR...    28   4.4  

>At5g32775.1 68418.m03902 hypothetical protein
          Length = 240

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 115 AMFIDHSVLHKPKTKKRATLLKSRTLKR*HKSISLMS 5
           A FI HS  H  K KKR   L +R L R   S ++++
Sbjct: 162 AFFIPHSTRHSSKRKKRRLQLFTRPLTRPRGSSTVLN 198


>At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1179

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 136 NRIGNTCAMFIDHSVLHKPKTKKRATLLKSRTLK 35
           NR+G    +F+D S L K     R+T +K R L+
Sbjct: 544 NRVGAVRGIFLDMSELKKKLPLDRSTFIKMRNLR 577


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,140,830
Number of Sequences: 28952
Number of extensions: 225122
Number of successful extensions: 387
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)