Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311G07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   1.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   1.7  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    26   3.9  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    25   6.8  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    25   6.8  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        25   9.0  
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    25   9.0  

>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 410  RSREDFGLSGLACQFPLCRVLGRSVAETL 324
            R+ +D   S     FPLC++L RSV ++L
Sbjct: 1116 RTLDDIKESVREASFPLCKLLARSVIQSL 1144


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -1

Query: 209  SQMLTYLRDFLLVLEDKYTFLL 144
            SQ+  YLR+++  L D++TFLL
Sbjct: 1115 SQVYLYLREWINALFDRFTFLL 1136


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 430 KLKLQAAEAVKILDYLGWHVNFHY 359
           KLKL   E+ K +++   HV FHY
Sbjct: 330 KLKLTIEESSKSVEHANQHVCFHY 353


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 317 LHAMSPRPSDRAPYIMEIDMPAQIIQNLHGFCSLKF 424
           L+ ++PRP +   Y +E    +Q   +L   C L F
Sbjct: 264 LNEIAPRPHNSGHYTIEACPTSQFEAHLRAICGLPF 299


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 362 LCRVLGRSVAETLRAK*SASLPTRL 288
           LCR+LG+ + E +     A+LP+ L
Sbjct: 650 LCRILGKRIPEIILCPIYANLPSEL 674


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
 Frame = -3

Query: 201 VNVPTRLSLGP*RQIH--------LFASIACSVTETLRAKSKC 97
           VN P  + +GP RQIH         +A+I     + LR++ +C
Sbjct: 146 VNFPKHVEVGPGRQIHSRVKVQYFAYANIIYQSADKLRSRREC 188


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 124 GDIACKVEVLAYLRDF-LLVHEDKYTFFACIACSV 23
           G  AC++E+  YLRD+ L +   +  F A  A S+
Sbjct: 413 GGGACEMELSKYLRDYSLTISGKQQNFIAAFARSL 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,916
Number of Sequences: 5004
Number of extensions: 43725
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)