Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311G07f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0194 - 13957709-13957925,13960065-13960129,13960281-139604... 29 1.7
08_01_0572 + 5090474-5090787,5090973-5091000,5092725-5092837,509... 29 1.7
04_04_1686 + 35362454-35362781,35362891-35363165,35363770-35363880 29 1.7
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 29 2.3
06_03_0599 + 22632625-22633030,22634733-22636724,22636819-22637171 28 4.0
06_03_0846 - 25328224-25330613,25330716-25330794 28 5.2
06_01_0775 - 5795329-5795801,5796582-5796720,5796810-5797049,579... 28 5.2
06_03_0609 + 22710442-22713502,22713596-22713948 27 6.9
09_01_0039 - 687711-688607,692336-693113,693414-693501,693761-69... 27 9.1
05_01_0440 + 3487874-3487925,3488032-3488181,3488350-3488477,348... 27 9.1
04_01_0614 + 8049199-8049579 27 9.1
>10_07_0194 -
13957709-13957925,13960065-13960129,13960281-13960454,
13960847-13960889,13961081-13961225,13961305-13961413,
13961694-13961822,13961935-13962031,13962639-13962703,
13963275-13963439
Length = 402
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -1
Query: 164 DKYTFL--LP*HARSRRHCVQSRSASLPTRLSLGP*RQIHLFCLHSMLSHGN 15
D++TF+ LP HARSR+ ++ + T++ P IH F + S G+
Sbjct: 184 DEFTFVGFLPKHARSRKERLEISACQAATQIFYVPPHGIHQFLSDAASSFGD 235
>08_01_0572 +
5090474-5090787,5090973-5091000,5092725-5092837,
5092947-5093058
Length = 188
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 115 QCLRDRACYGSKKVYLSSRTKR 180
+C R R C G KVYL+ R KR
Sbjct: 71 KCSRKRGCCGKPKVYLAGRWKR 92
>04_04_1686 + 35362454-35362781,35362891-35363165,35363770-35363880
Length = 237
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 43 QKRCICLHGPRESRVGRLALRLCTQCLRDR 132
++ C+C PRE VG +C+QCLR+R
Sbjct: 11 ERPCMCYFHPREEVVG-----VCSQCLRER 35
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 223 CVHREVKC*RTYATFSWSLKTNTPFCFHSMLGHGDIACKVEVLAYLR 83
CVH + R T +W + T H L GD A + E+L+Y R
Sbjct: 72 CVHALAR--RLSKTHNWVVALKTLVVIHRALREGDAAFREELLSYRR 116
>06_03_0599 + 22632625-22633030,22634733-22636724,22636819-22637171
Length = 916
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 273 KTNNRFCSHSMLGRGDLAYIGKSNVNVP 190
K NRF S ++LG G + K N+++P
Sbjct: 597 KATNRFSSTNLLGSGSFGTVYKGNLHLP 624
>06_03_0846 - 25328224-25330613,25330716-25330794
Length = 822
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = -1
Query: 299 PTRLNLVSPRQIT-VFVPIACS--VAETLRT*GSQMLTYLRDFLLVLEDKYTFLLP*HAR 129
P + L + R + +FV + S +AE ++ S+M+TYLR L + D +L+P +
Sbjct: 365 PLKTKLYACRYMDEIFVAVVGSRDIAEDIK---SEMITYLRKTLFLEVDDRLYLMPVRSN 421
Query: 128 SR 123
SR
Sbjct: 422 SR 423
>06_01_0775 -
5795329-5795801,5796582-5796720,5796810-5797049,
5797278-5797313,5797421-5797501,5797937-5797994,
5799440-5799630
Length = 405
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Frame = +2
Query: 149 KRCICLQ----GPRE--SRVGTLTFDFPMYARSPRPSML--WEQKRL 265
+ CIC Q GP + S VGT PM S RPSML W K L
Sbjct: 129 RNCICGQIYDSGPVDFFSDVGTQFLQNPMIGNSSRPSMLLSWMTKAL 175
>06_03_0609 + 22710442-22713502,22713596-22713948
Length = 1137
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 273 KTNNRFCSHSMLGRGDLAYIGKSNVNVP 190
K NRF S ++LG G + K N++ P
Sbjct: 818 KATNRFSSTNLLGSGSFGTVYKGNLHFP 845
>09_01_0039 -
687711-688607,692336-693113,693414-693501,693761-694148,
694176-694401,694527-694680,695073-695145
Length = 867
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 452 FGRPRQIQVETSGCRSREDFG-LSGLACQFPLCRVLGRSV 336
FGR R++ VE GC + F L L PL +G+ V
Sbjct: 39 FGRVREVDVEADGCNRHDCFRILVDLPVAKPLKSKIGQKV 78
>05_01_0440 +
3487874-3487925,3488032-3488181,3488350-3488477,
3489411-3489551
Length = 156
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 168 KDQEKVA*VR*HLTSLCTQGLRDRACYGNKNGYLSW*NK 284
KD+EK + + HL CT+ + +K YL W NK
Sbjct: 110 KDEEKSSKIN-HLMGTCTKQNENLDVVRDKENYLRWRNK 147
>04_01_0614 + 8049199-8049579
Length = 126
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 140 MEAKRCICLQGPRESRVGTLTFDFPMYARSPRPS 241
M A C + R + + TL D P+Y SP PS
Sbjct: 1 MTADECSTHRRSRGNHLSTLPSDTPVYGPSPSPS 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,682,129
Number of Sequences: 37544
Number of extensions: 306667
Number of successful extensions: 743
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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