Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311G07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.44 
SB_46038| Best HMM Match : TRI5 (HMM E-Value=3.5)                      30   1.3  
SB_1134| Best HMM Match : DMAP_binding (HMM E-Value=6.4)               30   1.3  
SB_47252| Best HMM Match : TP2 (HMM E-Value=9.6)                       27   7.1  
SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053)                   27   7.1  

>SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 409

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 46  KRCICLHGPRESRVGRLALR-LCTQCLRDRACYG 144
           +RC C+ G RE RV ++  R +CT+C+R     G
Sbjct: 344 ERCACVQGVRELRVYKVYERCVCTRCMRGACVQG 377



 Score = 31.1 bits (67), Expect = 0.58
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +1

Query: 46  KRCICLHGPRESRVGRLALR-LCTQCLRDRACYGSKKVYLSSRTKRKSR 189
           +RC+C+ G RE  V ++  R +CT+C R     G ++V +    +R +R
Sbjct: 92  ERCVCVQGVREVCVYKVYERCVCTRCTRGACVQGVREVRVYKVYERCTR 140



 Score = 30.7 bits (66), Expect = 0.76
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 46  KRCICLHGPRESRVGRLALR-LCTQCLRDRACYGSKKV 156
           +RC+C+ G RE  V ++  R +CT+C R     G ++V
Sbjct: 48  ERCVCVQGVREVCVYKVYERCVCTRCTRGACVQGVREV 85



 Score = 28.7 bits (61), Expect = 3.1
 Identities = 22/63 (34%), Positives = 31/63 (49%)
 Frame = +2

Query: 2   LCTQCFRD*ACYASKKGVFVFMDQEKVA*VG*HFDFARNVSVTEHAMEAKRCICLQGPRE 181
           +CT+C R  AC    + V V+   E+    G      R V V +     +RC+C+QG RE
Sbjct: 113 VCTRCTRG-ACVQGVREVRVYKVYERCT-RGVCVQGVREVCVYK---VYERCVCVQGVRE 167

Query: 182 SRV 190
            RV
Sbjct: 168 VRV 170



 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 46  KRCICLHGPRESRVGRLALRLCTQCLRDRACYGSKKVY 159
           +RC+C+ G R+ RV +++ R    CLR    Y   KVY
Sbjct: 196 ERCVCVKGVRDVRVNKVSER----CLRGACVY---KVY 226


>SB_46038| Best HMM Match : TRI5 (HMM E-Value=3.5)
          Length = 541

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
 Frame = +1

Query: 112 TQCLRDRACYGSKKVYLSSRTKRKSRRYV--NI*LPY-----VRKVSATEHAMGTKTVIC 270
           T CLR ++ YGS+   LS   ++K +R +   + LP       R     +H+ G      
Sbjct: 71  TSCLRPKSFYGSRIESLSFAYRKKPQRKLKRKVELPKKKTTPKRSKRKLKHSQGDVKYSK 130

Query: 271 LGETRLSRVGKLALYFARNVSATERPSTLHN 363
             ET+L R+ KL++     V  +  P +  N
Sbjct: 131 RTETQLDRMSKLSIPLTDVVKYSPSPRSFPN 161


>SB_1134| Best HMM Match : DMAP_binding (HMM E-Value=6.4)
          Length = 422

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
 Frame = +1

Query: 112 TQCLRDRACYGSKKVYLSSRTKRKSRRYV--NI*LPY-----VRKVSATEHAMGTKTVIC 270
           T CLR ++ YGS+   LS   ++K +R +   + LP       R     +H+ G      
Sbjct: 46  TSCLRPKSFYGSRIESLSFAYRKKPQRKLKRKVELPKKKTTPKRSKRKLKHSQGDVKYSK 105

Query: 271 LGETRLSRVGKLALYFARNVSATERPSTLHN 363
             ET+L R+ KL++     V  +  P +  N
Sbjct: 106 RTETQLDRMSKLSIPLTDVVKYSPSPRSFPN 136


>SB_47252| Best HMM Match : TP2 (HMM E-Value=9.6)
          Length = 291

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 149 KRCICLQGPRESRVGTLTFDFPMYARSPRPSMLWEQK 259
           KRC   Q    SR G+ TF+  +    PRP    E K
Sbjct: 226 KRCQTEQSRERSRTGSSTFEQGLLGPHPRPKRKRENK 262


>SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053)
          Length = 636

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 226 PCVHREVKC*RTYATFSWSLKTNTPFCFHSMLG 128
           P VH + +C  T   F W L  +T F   + +G
Sbjct: 371 PVVHHDKQCLDTQLMFDWLLPPSTDFVLRNCVG 403


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,028,422
Number of Sequences: 59808
Number of extensions: 358944
Number of successful extensions: 694
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)