Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311G07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AC006678-4|AAK68391.1|  197|Caenorhabditis elegans Hypothetical ...    28   4.7  
U28929-4|AAA68347.3|  338|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical protein
            F48E3.8b protein.
          Length = 1299

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 31   MLCKQKRCICLHGPRESRVGRLALRLCTQCLRDRAC 138
            ++ K+ +C+    PRE    R   RL T+C RD +C
Sbjct: 939  LVLKENKCVV--SPREQTRRRQPSRLLTECPRDGSC 972


>AC006678-4|AAK68391.1|  197|Caenorhabditis elegans Hypothetical
           protein R05G9.1 protein.
          Length = 197

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 34  LCKQKRCICLHGPRESRVGRLALRLCTQCLRDRACYGSKKV 156
           L  +K C C   P   +VGRL  R    C R++ C G +++
Sbjct: 8   LLGRKLCFCPLKPHPQQVGRLLER----CRREKICGGERRI 44


>U28929-4|AAA68347.3|  338|Caenorhabditis elegans Hypothetical
           protein F09C12.6 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 349 SVARSRRHCVQSRVLAYLHDLILFHQ 272
           + +R R  CV  +++A LHD + FH+
Sbjct: 2   NTSRERDLCVTPKLIADLHDYVSFHR 27


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,265,282
Number of Sequences: 27780
Number of extensions: 257992
Number of successful extensions: 562
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)