Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311G05f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             27   7.1  
SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26)           27   7.1  
SB_52114| Best HMM Match : Galactosyl_T (HMM E-Value=3.5e-25)          27   7.1  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)               27   9.4  
SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 216 ARERLKLDLLTIAYAKPFLHQSYQDIFPFHW 124
           A +RL  DL+T  Y + F + SY+    F W
Sbjct: 120 AEDRLYGDLITSEYREGFFNMSYKVAMGFEW 150


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 447 VLKTKPMVLPGQPGFP 494
           ++ TKP VLPG PG P
Sbjct: 879 IINTKPAVLPGLPGTP 894


>SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26)
          Length = 308

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 216 ARERLKLDLLTIAYAKPFLHQSYQDIFPFHW 124
           A +RL  DL+T  Y + F + SY+    F W
Sbjct: 116 AEDRLYGDLITSEYREGFFNMSYKVAMGFEW 146


>SB_52114| Best HMM Match : Galactosyl_T (HMM E-Value=3.5e-25)
          Length = 383

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 216 ARERLKLDLLTIAYAKPFLHQSYQDIFPFHW 124
           A +RL  DL+T  Y + F + SY+    F W
Sbjct: 191 AEDRLYGDLITSEYREGFFNMSYKVAMGFEW 221


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 226  WKNIGESVLILFVVFTGNPWT 288
            W  I E++L+   +  GNPWT
Sbjct: 3023 WATISEAILLWSTMSEGNPWT 3043


>SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)
          Length = 1341

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = +3

Query: 180 QWLKDQVLAAHEPVHVEEYWRERTNPIRRFYRKPLDVLFAKLTPMLGEQRAAHYRYIS 353
           +W  +  +  HE  H   +W E+  P R  Y K     +++ +  L +     Y Y S
Sbjct: 753 KWCDNFKVVLHELGHTIGFWHEQNRPDRDKYVKSWRFAYSRYSRRLIDSLEVPYDYYS 810


>SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1376

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 267 FYRKPLDVL--FAKLTPMLGEQRAAHYRYISGKLGL 368
           ++  P D++  + KLTP+LG++ A  +    G+ GL
Sbjct: 497 YHEPPEDIVPDYKKLTPVLGKEPAPEFDIKKGRAGL 532


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,489,104
Number of Sequences: 59808
Number of extensions: 379063
Number of successful extensions: 877
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)