Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311G04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 27 2.2
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 26 3.9
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 26 3.9
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 25 5.2
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 5.2
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 5.2
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce... 25 9.0
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 25 9.0
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 25 9.0
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 25 9.0
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +2
Query: 410 SSSDVTRCLKARRLRLWNRGCHQTGFSPSPRRGRYPT 520
SS TR + R RGC T P PR G T
Sbjct: 319 SSKGPTRLYEVARFNCTTRGCEYTQNIPCPRAGHSHT 355
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 184 ACPVLSEDYFRPWRQLAAAS 243
+CP+ +EDY++ + Q+ AAS
Sbjct: 242 SCPLCNEDYYKYFLQMDAAS 261
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 439 GAAPETVESRLSSDGVLTITAPRKVPD 519
G P T+ES ++ D L I RK+ D
Sbjct: 452 GTDPSTLESDIAEDAALQIDEVRKISD 478
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 5.2
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 2/110 (1%)
Frame = +2
Query: 176 LPSPVQCSPKTTSDRGDNSRLHLVTSAPA*RPTRTSSKSIWTCSTSRRKRFR*RLPTGTS 355
L P++ P TTSD + V+S+P+ R S+ T + T ++
Sbjct: 260 LDEPIKALPSTTSDAPSSLLNTNVSSSPS--KFRKFLSSVIPAKTDLSAK---ESLTSST 314
Query: 356 W*KASTKRRKTSTGIFQGSSSDVTRCLKARRLRLWNRGC--HQTGFSPSP 499
S K RK S+G+ SS VT K R+ + N H T F P
Sbjct: 315 RLSTSYKTRKRSSGV-AFSSETVTSSSKERKRSVENEMLKPHPTIFESPP 363
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 190 PVLSEDYFRPWRQLAAASRDLGSSIKADKDKFQVNL 297
P SED P + L A ++ +K+D ++F+V++
Sbjct: 439 PTSSEDNLHPLQPLTTADEEMDLDLKSD-ERFKVDI 473
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 185 PVQCSPKTTSDRGDNSRLHLVTSAPA*RPTRTSSKSI 295
PVQ SP TSD+ D +L+ + P S+SI
Sbjct: 622 PVQVSPLFTSDKNDPLQLNPQSDDSTSSPKHGKSRSI 658
>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 324
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 24 SAFYHTYSNTTKDVS 68
S FYHT SN + DVS
Sbjct: 140 STFYHTISNHSDDVS 154
>SPAC23A1.04c |mnl1||alpha mannosidase-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 160 PNDMLAAVACPVLSEDYFRP 219
PND LA ++C L DY P
Sbjct: 56 PNDELAPLSCEGLGPDYENP 75
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 158 PRTTCWLPSPVQCSPKTTSDRGDNSRLHLVTS-APA*RPTRTSSKSI 295
PR T P P+ K TSD + S ++V P T+ S++S+
Sbjct: 409 PRLTSKQPIPMASPAKLTSDTSNKSSAYVVVDHHPIISSTQLSNESL 455
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 193 VLSEDYFRPWRQLAAASRDLGSSIKADKDKFQV 291
+L+ Y + W+QL++ + + S +DKD Q+
Sbjct: 358 LLNGRYKKRWQQLSSEVKKISDSASSDKDVKQL 390
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,049,362
Number of Sequences: 5004
Number of extensions: 38132
Number of successful extensions: 101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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