Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311G04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 39 0.003
03_02_0484 + 8805053-8805538 39 0.003
03_02_0483 - 8804021-8804485 39 0.003
03_02_0478 + 8775892-8776377 37 0.009
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 36 0.026
01_01_0229 - 1943473-1943922 35 0.034
01_01_0231 + 1951047-1951499 35 0.046
11_02_0041 - 7669692-7670312 34 0.080
02_05_0494 + 29486960-29487454 33 0.11
02_02_0077 - 6586638-6587165 33 0.14
01_01_0227 + 1933247-1933699 33 0.18
02_05_0308 - 27754340-27754634,27755591-27755696,27755781-277558... 30 0.98
07_03_0725 + 20991640-20992471,20993308-20993418,20993542-209937... 28 4.0
03_02_0467 + 8707777-8707892,8708030-8708096,8708190-8708260,870... 28 4.0
01_01_0277 + 2274383-2274465,2274889-2274955,2275040-2275110,227... 28 5.2
05_03_0628 - 16367841-16369259 27 6.9
02_01_0539 + 3941189-3941896,3942110-3942394,3942508-3943394,394... 27 9.1
>03_02_0485 - 8808139-8808618
Length = 159
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +1
Query: 403 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 516
S +F+RR+ LPE PE +++ + +GVLT+T P++ P
Sbjct: 111 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 147
>03_02_0484 + 8805053-8805538
Length = 161
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +1
Query: 403 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 516
S +F+RR+ LPE PE +++ + +GVLT+T P++ P
Sbjct: 113 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 149
>03_02_0483 - 8804021-8804485
Length = 154
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +1
Query: 403 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 516
S +F+RR+ LPE PE +++ + +GVLT+T P++ P
Sbjct: 106 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 142
>03_02_0478 + 8775892-8776377
Length = 161
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/36 (41%), Positives = 27/36 (75%)
Frame = +1
Query: 403 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRK 510
S +F+RR+ LP+ A PE +++ + +GVLT+T P++
Sbjct: 113 SGKFLRRFRLPDNAKPEQIKASM-ENGVLTVTVPKE 147
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 35.5 bits (78), Expect = 0.026
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +1
Query: 403 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 507
S QF+RR+ LPE A + V++ L +GVLT+T P+
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 35.1 bits (77), Expect = 0.034
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +1
Query: 403 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 507
S QF+RR+ LPE A + V++ + +GVLT+T P+
Sbjct: 101 SGQFMRRFRLPENAKVDQVKASM-ENGVLTVTVPK 134
>01_01_0231 + 1951047-1951499
Length = 150
Score = 34.7 bits (76), Expect = 0.046
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +1
Query: 403 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 507
S QF+RR+ LPE A + V++ + +GVLT+T P+
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGM-ENGVLTVTVPK 135
>11_02_0041 - 7669692-7670312
Length = 206
Score = 33.9 bits (74), Expect = 0.080
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +1
Query: 409 QFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 516
+F RR+ +P GA V +RL DGVLT+T P KVP
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVP-KVP 174
>02_05_0494 + 29486960-29487454
Length = 164
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +1
Query: 406 RQFVRRYALPEGAAPETVESRLSSDGVLTITAPRK 510
R V ++ LPE AA + +R++ DGVLT+T P++
Sbjct: 106 RAAVTQFRLPEDAAADEASARMA-DGVLTVTVPKR 139
>02_02_0077 - 6586638-6587165
Length = 175
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +1
Query: 409 QFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 516
+F+RR+ LPE A + V + DGVLT+T +K P
Sbjct: 117 KFMRRFPLPESADLDGVRAEYK-DGVLTVTVDKKPP 151
>01_01_0227 + 1933247-1933699
Length = 150
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +1
Query: 403 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRK 510
S +F RR+ LP GA + V + + +GVLT+T P++
Sbjct: 102 SGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKE 136
>02_05_0308 -
27754340-27754634,27755591-27755696,27755781-27755855,
27756039-27757410
Length = 615
Score = 30.3 bits (65), Expect = 0.98
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -1
Query: 338 VFTEISSGEKCCTSRLTWNLSLSAFMLEPRSRD 240
+F ++S GE+C ++ T+N+ +SA + R+ D
Sbjct: 401 LFEKMSKGEECLPNQDTYNIIISAMFMRKRAED 433
>07_03_0725 +
20991640-20992471,20993308-20993418,20993542-20993739,
20993860-20993891,20993943-20994153,20994806-20995043,
20995507-20995657,20996171-20996533
Length = 711
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +1
Query: 133 DQDFGLALTPNDMLAAVACPVLSEDYFRPWRQLAAASRD 249
D+ FGLAL DM A AC F+ R L RD
Sbjct: 75 DRVFGLALCRGDMRDAAACAGCVSGAFQRLRALCGRDRD 113
>03_02_0467 +
8707777-8707892,8708030-8708096,8708190-8708260,
8708629-8708746,8708820-8708893,8709278-8709333,
8709448-8709531,8709611-8709698,8709786-8709863,
8710335-8710391,8710606-8711044
Length = 415
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 419 DVTRCLKARRLRLWNRGCHQTGFSPSPRR 505
+ + + A R+RLWN+G F P R+
Sbjct: 189 ETAKVVSANRVRLWNKGVDSESFHPKFRK 217
>01_01_0277 +
2274383-2274465,2274889-2274955,2275040-2275110,
2275550-2275667,2275755-2275828,2276094-2276149,
2276237-2276320,2276422-2276509,2276602-2276679,
2276814-2276870,2277074-2277578
Length = 426
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 419 DVTRCLKARRLRLWNRGCHQTGFSPSPR 502
+ + A R+RLWN+G F P R
Sbjct: 178 ETAHVISANRIRLWNKGVDSASFHPKFR 205
>05_03_0628 - 16367841-16369259
Length = 472
Score = 27.5 bits (58), Expect = 6.9
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = -1
Query: 347 PSAVFTEISSGEKCCTSRLTWNLSLSAFMLEPRSRDAAASCLHGLK*SSESTGQATAASM 168
P F +SSG+ T S S+F S++++++ L GLK T ++ S
Sbjct: 251 PLFSFKNLSSGQNAFTGLAGTGFSGSSFSFGSGSKESSSAPLFGLK-----TDGSSFPSF 305
Query: 167 SFGVSANPKS 138
S G S N S
Sbjct: 306 SIGASNNGSS 315
>02_01_0539 +
3941189-3941896,3942110-3942394,3942508-3943394,
3943473-3943643,3943726-3943744,3943763-3944014,
3944100-3944138,3944244-3944282
Length = 799
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +1
Query: 64 SLLPFVLGDWPRVRHNHWP-SRLVDQDFGLALTPN 165
S PFV GD P R +W +R D G PN
Sbjct: 192 SCTPFVFGDIPHPRARNWARARYQKHDDGTIFMPN 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,462,097
Number of Sequences: 37544
Number of extensions: 292502
Number of successful extensions: 1010
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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