Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311G02f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                128   2e-30
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          126   1e-29
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   8e-21
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              93   1e-19
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     52   4e-07
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    37   0.009
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.012
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.015
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              34   0.062
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                  34   0.062
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               32   0.25 
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              31   0.76 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   1.3  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)                      28   5.4  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  128 bits (310), Expect = 2e-30
 Identities = 58/60 (96%), Positives = 59/60 (98%)
 Frame = +1

Query: 238 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 417
           MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  126 bits (303), Expect = 1e-29
 Identities = 53/114 (46%), Positives = 81/114 (71%)
 Frame = +1

Query: 178 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVT 357
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER++G T+++    F+T   + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225

Query: 358 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT 519
           ++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + GQTREHA+LA T
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKT 279


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 8e-21
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +1

Query: 94  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 240
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 40/67 (59%), Positives = 52/67 (77%)
 Frame = +1

Query: 310 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 489
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 490 TREHALL 510
           TREHA+L
Sbjct: 61  TREHAIL 67


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 29/110 (26%), Positives = 52/110 (47%)
 Frame = +1

Query: 127 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 306
           +I H D+GK+T T  L+   G I         +EA  +     K     D ++ ER+RGI
Sbjct: 15  IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65

Query: 307 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 456
           ++  ++  F      + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 66  SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
 Frame = +1

Query: 94  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKFEKEAQEMGKGSFKYAW 267
           M K+    N+ VI HVD GKST T  L+ K G I   K    +F    ++          
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKS 71

Query: 268 VLDKLKAERERGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 444
               L  E        I   K    + + + +ID+PGH DF   +       D A+++V 
Sbjct: 72  TAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 131

Query: 445 AGTG 456
             +G
Sbjct: 132 CVSG 135


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
 Frame = +1

Query: 109 THINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE--KEAQEMGKGSFKYAWVLD 276
           T I + V+G+V+SGKST  G L Y     G  +  +  F    E Q     S  +  +  
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGRTSSISHEILGF 170

Query: 277 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS--QADCAVLIVAAG 450
               E         A    E S   +T ID  GH  ++K  I G +    D A+L++A  
Sbjct: 171 SCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFGLTGHSPDYAMLVIAGN 230

Query: 451 TG 456
            G
Sbjct: 231 AG 232


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 25/65 (38%), Positives = 31/65 (47%)
 Frame = +1

Query: 118  NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 297
            N  ++ HVD GKST    L+   G I K +  K                 VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986

Query: 298  RGITI 312
            RGIT+
Sbjct: 1987 RGITV 1991


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 34.3 bits (75), Expect = 0.062
 Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 2/137 (1%)
 Frame = +1

Query: 91  KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 264
           K+ +   + NI V+GHVDSGK++    L         DK    +      ++G  SF+ A
Sbjct: 28  KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87

Query: 265 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 444
            + + L   R  G   D+           +T++D PGH   IK +I G      A +I  
Sbjct: 88  -LPEHL---RSAGSEHDLL---------QMTLVDCPGHASLIKTIIGG------AQIIGE 128

Query: 445 AGTGEFEAGISKNGQTR 495
            GT   E G  ++G+ +
Sbjct: 129 CGT--IEGGFGQSGKVK 143


>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score = 34.3 bits (75), Expect = 0.062
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
 Frame = +1

Query: 115 INIVVIGHVDSGKST-----TTGHLIYKCGGIDKRTI-EKFEKEA---QEMGKGSFKYAW 267
           + + V+G+VD+GKST     T G L    G   +R    K E E+     +G     +  
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQRLFRHKHEMESGRTSSVGNDILGFDN 289

Query: 268 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG 408
               +    + G  +D A    E+SK  +T ID  GH  ++K  I G
Sbjct: 290 TGQVVNKAEQHGANVDWAKICKESSK-VITFIDLAGHERYLKTTIFG 335


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 352 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 456
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 301 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 447
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +1

Query: 277 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 444
           + K E ER ITI +         Y    +D PGH   +  M+ G +  D A+L++A
Sbjct: 49  RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIA 96


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 358 IIDAPGHRDFIKNMITGTSQADCAVLIV 441
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 303 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 163
           TT+T S     YPS+   +  +F        D T  N TT V  +T+
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282


>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
          Length = 737

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -3

Query: 312 DCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 163
           D  TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 344 DFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393



 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -3

Query: 303 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 163
           TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 548 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQSISA 594


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,919,535
Number of Sequences: 59808
Number of extensions: 315998
Number of successful extensions: 801
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)