Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311G01f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 29 0.42
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ... 27 1.7
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 27 2.2
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 26 3.0
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 26 3.0
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.9
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 26 3.9
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 25 6.8
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 25 6.8
SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|... 25 9.0
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 25 9.0
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 9.0
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 25 9.0
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun... 25 9.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 9.0
>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 29.1 bits (62), Expect = 0.42
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 358 LSGTTYCVLSGASQGIGRAIAVEVAKLLGPKSVI 459
L G T +++GAS GIG++ A E+AK+ K ++
Sbjct: 4 LDGKTI-LITGASSGIGKSTAFEIAKVAKVKLIL 36
>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 204 SVQSRLHRSFAPGGLRSRPCYRGHRGR 284
S+ + +HR+ GGL + PC +G+ G+
Sbjct: 262 SMVADMHRTILYGGLFAYPCSKGNNGK 288
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +1
Query: 370 TYCVLSGASQGIGRAIAVEVAKLLGPKSVILLLARNKDQLAITAALCES 516
++ +++G SQG+G+AIA E+ L G I+ K Q A+ A L +S
Sbjct: 23 SHILVTGGSQGLGKAIAKELV-LRGANVTIVARTVTKLQEAV-AELSDS 69
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 26.2 bits (55), Expect = 3.0
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = -2
Query: 256 RDRSPPGANDRCNRLCTLISFPPPCSSIGPLLIFFPTRLDIEVNPLTSRSMVENYLRNS 80
++RS + L I+ C++ PL I TRL IE LTSRS+ N + N+
Sbjct: 106 KNRSHQNLENHERLLFGAIAGAASCATTYPLDIA-RTRLSIETAGLTSRSLAINNVANN 163
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 157 FFPTRLDIEVNPLTSRSMVENYLRN 83
F P L++E P+T++ V N +RN
Sbjct: 491 FIPWSLEVEKQPVTTKLKVPNLVRN 515
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 112 EKLADSPQYLALLERKLKAVRSKNKVVEN 198
EKLA + Q L +++K + +SKN V E+
Sbjct: 6 EKLAAAKQRLLEVKKKKRQAKSKNSVAED 34
>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 388 GASQGIGRAIAVEVAKLLGP-KSVILLL 468
G S + AVE+AK+LGP K+V+ +L
Sbjct: 287 GGSSCLNVVAAVEMAKILGPGKTVVTIL 314
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 337 PFLLTKLIQTPVCPPIVYRPLCPR*QGRDRSPPGANDRCNRLCTLISFPPPCS 179
PF++ L P PP++ + + +R+PP N R + S PPP S
Sbjct: 427 PFMMPGL---PQMPPMMMNAIAGQVYHNNRNPPRTNSRPSN----ASVPPPSS 472
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 185 RWWKTYQRTEPIASVVCSGRAAISTLLSGTQRPIN 289
+WWK + T A+V + + AI T++S Q+ N
Sbjct: 447 KWWKESKGTTSEATVAPTIQEAIETVMSIKQKSRN 481
>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 208 YRADCIGRLLREGCDLDPVIGDTEADKLLEDKPES 312
YR D + +R P++G+TE K E KPE+
Sbjct: 80 YRDDFVNLCVRNPVPC-PLLGETEIGKPTEFKPEA 113
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 76 ISNFEDNFQPSTEKLADSPQYLALLER 156
ISNF ++ PS L SP + +ER
Sbjct: 420 ISNFPNSLSPSLLALLSSPYFTKWIER 446
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 165 SGPIEEQGGGKLISVQSRLHRSFAPGGLRSRPCY 266
SG E++G KL+SV +L+ G+R CY
Sbjct: 23 SGWREQEGIFKLLSVNPKLYDDAPTEGIRRVLCY 56
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 109 TEKLADSPQYLALLERKLKAVRSKNKVVENLSAYRADCIG 228
TE+ Q A L+R ++KN V N++AY +G
Sbjct: 669 TEQAEKIRQLRAQLDRFSGIAQNKNTVTGNIAAYNTKSLG 708
>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 199 SFPPPCSSIGPLLIFFPTRLDIEVNPLTSRSMVENYLRNS 80
SFPP +++GP L++ P E N + + N+LR++
Sbjct: 187 SFPPKKAAMGPDLVWGP-----EYNGYPTALQIHNWLRST 221
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Frame = +2
Query: 350 ASIYPAPRTASCPAPPRA--SGGPLP 421
A I P P A P PP A GGP P
Sbjct: 738 AVIVPTPAPAPIPVPPPAPIMGGPPP 763
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,859
Number of Sequences: 5004
Number of extensions: 47329
Number of successful extensions: 171
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -