Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311G01f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39239| Best HMM Match : zf-CCHC (HMM E-Value=0.0017) 30 1.0
SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_47653| Best HMM Match : zf-CCHC (HMM E-Value=0.0017) 30 1.0
SB_26583| Best HMM Match : adh_short (HMM E-Value=2.4e-15) 30 1.3
SB_51317| Best HMM Match : E-MAP-115 (HMM E-Value=0.58) 30 1.3
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_43297| Best HMM Match : Astacin (HMM E-Value=3.5e-31) 29 1.8
SB_50918| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 28 4.1
SB_26979| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=0.017) 28 4.1
SB_1075| Best HMM Match : rve (HMM E-Value=0.0089) 28 4.1
SB_913| Best HMM Match : E-MAP-115 (HMM E-Value=1.7) 28 5.4
SB_46898| Best HMM Match : Amelogenin (HMM E-Value=4.2) 28 5.4
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_52254| Best HMM Match : ANF_receptor (HMM E-Value=7.84727e-44) 27 7.1
SB_36093| Best HMM Match : Globin (HMM E-Value=1.6e-08) 27 7.1
SB_32367| Best HMM Match : adh_short (HMM E-Value=1.7e-07) 27 7.1
SB_58629| Best HMM Match : Homeobox (HMM E-Value=0.05) 27 9.4
SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 27 9.4
SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_24255| Best HMM Match : Herpes_PAP (HMM E-Value=2) 27 9.4
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0) 27 9.4
>SB_39239| Best HMM Match : zf-CCHC (HMM E-Value=0.0017)
Length = 307
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 262 QGRDRSPPGANDRCNRLCTLISFPPPCS 179
QGR++ P N RCNR +I PP S
Sbjct: 141 QGREKQTPNNNRRCNRQRNIIWLNPPFS 168
>SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1268
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/26 (57%), Positives = 22/26 (84%)
Frame = +1
Query: 358 LSGTTYCVLSGASQGIGRAIAVEVAK 435
L+G T + +GAS+GIG+AIAV+VA+
Sbjct: 3 LAGKTVFI-TGASRGIGKAIAVKVAR 27
>SB_47653| Best HMM Match : zf-CCHC (HMM E-Value=0.0017)
Length = 759
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 262 QGRDRSPPGANDRCNRLCTLISFPPPCS 179
QGR++ P N RCNR +I PP S
Sbjct: 410 QGREKQTPNNNRRCNRQRNIIWLNPPFS 437
>SB_26583| Best HMM Match : adh_short (HMM E-Value=2.4e-15)
Length = 355
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +1
Query: 376 CVLSGASQGIGRAIAVEVAKLLGPKSVILLLARNKDQLAITAALC 510
C ++GAS GIG +A E+AK G K ++L AR + +L C
Sbjct: 45 CWITGASSGIGENLAYELAK-FGCK--LVLSARRRSELERVKEQC 86
>SB_51317| Best HMM Match : E-MAP-115 (HMM E-Value=0.58)
Length = 696
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = -2
Query: 514 TRRGRR*WRADLCYVPGAG*RISDREVSQPPRQWPARCPGRRRTGRSTWCRINR 353
T G +DL + G G S V + PR P PGRR R W + +
Sbjct: 355 TEEGEDGMGSDLGMIGGRGKDTSRVVVQKTPRSKPKGMPGRRTPARGEWASMKQ 408
>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1507
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 61 GNKGIISNFEDNFQPSTEKLADSPQYLALLERKLKAVRSKNKVV-ENLSAYR 213
G KG++ E+ EKL S Q LA ++++++ ++ V+ ENL R
Sbjct: 796 GMKGVVEELENKLSKLQEKLEQSNQQLAAKSKRIESLNAEMGVLRENLEDER 847
>SB_43297| Best HMM Match : Astacin (HMM E-Value=3.5e-31)
Length = 716
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 43 PWGSEVGNKGIISNFEDNFQPSTEKLADSPQYLAL 147
P G K II +FE P L+D P YL+L
Sbjct: 72 PGGRGSEGKAIIQSFEKRLSPPAYLLSDKPAYLSL 106
>SB_50918| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 220 NRLCTLISFPPPCSSIGPLLIFFPTRLD 137
N+LC + F PP +S L+ FPTR D
Sbjct: 398 NQLCRICEFHPPDNSPAIHLVTFPTRDD 425
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = +1
Query: 55 EVGNKGIISNFEDNFQPSTEKLADSPQYLALLERKLKAVRSKNKVVENLSAYRADCIGRL 234
E+ + +I +F DN S A+ Q L+ V K + +A I L
Sbjct: 249 EMTTRTLIGSFLDNLSVSRSSAANHKQKRRSLKSSASKVSKKRRRTIGDNATPRTVIETL 308
Query: 235 LREGCDLDPVIG 270
LRE + PV+G
Sbjct: 309 LREAPEDTPVVG 320
>SB_26979| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=0.017)
Length = 453
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +1
Query: 358 LSGTTYCVLSGASQGIGRAIAVEVAK 435
LSG C+++GAS+GIG+ IA+ + K
Sbjct: 50 LSGKV-CLVTGASRGIGKGIALMLGK 74
>SB_1075| Best HMM Match : rve (HMM E-Value=0.0089)
Length = 1617
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = -2
Query: 442 REVSQPP---RQWPARCPGRRRTGR--STWCRINR 353
+E++Q P Q PAR PGR GR + W RINR
Sbjct: 1131 QELAQEPGKRHQEPARHPGRVEAGRRLAKWNRINR 1165
>SB_913| Best HMM Match : E-MAP-115 (HMM E-Value=1.7)
Length = 856
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -3
Query: 489 ELIFVTCQEQDNGFRTEKFRNLHGNGPPDALGGAGQDAVR 370
++++ Q+ F + F + HG G D +GG + VR
Sbjct: 424 KILYCLAQKLQKNFSWKYFASSHGKGVVDGVGGRAKSLVR 463
>SB_46898| Best HMM Match : Amelogenin (HMM E-Value=4.2)
Length = 210
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -2
Query: 367 CRINRC*TT*PFLLTKLIQTPVCP--PIVYRPLCP 269
CR+ T F L ++ TP+CP ++ PLCP
Sbjct: 106 CRLKEILNTPLFPLKDILNTPLCPLKEMLNTPLCP 140
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 237 PGGLRSRPCYRGHRGR*TIGGQTGV 311
P GL RP +G RGR + GQ G+
Sbjct: 969 PPGLPGRPGLKGERGRDGLDGQNGL 993
>SB_52254| Best HMM Match : ANF_receptor (HMM E-Value=7.84727e-44)
Length = 933
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = +1
Query: 43 PW--GSEVGNKGIISN-FEDNFQPSTEKLADSPQYLALLERKLKAVRSKNKVV 192
PW G++V GI+ D QPS K + Y KA KN+V+
Sbjct: 782 PWVRGTDVWRPGILRRPTNDEEQPSKHKSEEHSSYTVYTNADKKAFMQKNRVL 834
>SB_36093| Best HMM Match : Globin (HMM E-Value=1.6e-08)
Length = 205
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 106 STEKLADSPQYLALLERKLKAVRSKNKVVENLSAYRA 216
S EK+A+SP R +K+V + +EN+ Y A
Sbjct: 80 SNEKIAESPALYGHARRVMKSVDNAVASIENVQVYSA 116
>SB_32367| Best HMM Match : adh_short (HMM E-Value=1.7e-07)
Length = 384
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 379 VLSGASQGIGRAIAVEVAKLLGPKSVILLLARNKDQLA 492
+++G GIG+AIA E+ LG K VI + K Q A
Sbjct: 20 IVTGGGTGIGKAIAAELLS-LGSKVVIASRSEGKLQKA 56
>SB_58629| Best HMM Match : Homeobox (HMM E-Value=0.05)
Length = 466
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/71 (21%), Positives = 32/71 (45%)
Frame = +1
Query: 16 RLVAFA*MDPWGSEVGNKGIISNFEDNFQPSTEKLADSPQYLALLERKLKAVRSKNKVVE 195
RL M+P+ + + ++ + DSP +A+++ L A++++N
Sbjct: 83 RLTLLGNMEPYEVMIVQNWAMKFLSQKYRETQSDCQDSPAVIAIMQHTLAALKAQNP-NN 141
Query: 196 NLSAYRADCIG 228
++ YR D G
Sbjct: 142 TVAFYRQDNAG 152
>SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 716
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/54 (22%), Positives = 30/54 (55%)
Frame = +1
Query: 52 SEVGNKGIISNFEDNFQPSTEKLADSPQYLALLERKLKAVRSKNKVVENLSAYR 213
SE N G+ ++F+ + + ++L +P Y ++ R + + + +NL+++R
Sbjct: 465 SEPRNSGVDTSFDISCKVCLQELKAAPVYRSVSRRSSEVLSPPDMYADNLNSHR 518
>SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2391
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 299 TNRSLNKLCE*KWLCRLASIYPAPRTASCPAPPRASGGPL 418
T +++ LC +L + PAP T + PA P ASG P+
Sbjct: 77 TAKTIVSLCLATFLVKPLETTPAPTTPTSPAAP-ASGPPI 115
>SB_24255| Best HMM Match : Herpes_PAP (HMM E-Value=2)
Length = 919
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 504 GGGDGELIFVTCQEQDNGFRTEKFRNLHGNGPPDALGGAG 385
GGG G I++ CQ+ +G+ G G P GGAG
Sbjct: 164 GGGSGGSIWINCQDM-SGYGRVSVDG--GKGSPKGGGGAG 200
>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
Length = 442
Score = 27.1 bits (57), Expect = 9.4
Identities = 21/78 (26%), Positives = 34/78 (43%)
Frame = +1
Query: 76 ISNFEDNFQPSTEKLADSPQYLALLERKLKAVRSKNKVVENLSAYRADCIGRLLREGCDL 255
+ ED+ + KLAD+ L E++ KV+EN A + + L R+
Sbjct: 50 LQQLEDDLDAAESKLADTQGQLTEAEKQADESERARKVLENRGASDEERLASLERQ--YN 107
Query: 256 DPVIGDTEADKLLEDKPE 309
D + EA+K E+ E
Sbjct: 108 DALERTEEAEKQYEEISE 125
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,808,455
Number of Sequences: 59808
Number of extensions: 413059
Number of successful extensions: 1238
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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