Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311G01f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18210.1 68418.m02137 short-chain dehydrogenase/reductase (SD... 37 0.007
At3g47350.1 68416.m05148 short-chain dehydrogenase/reductase (SD... 33 0.088
At3g47360.1 68416.m05149 short-chain dehydrogenase/reductase (SD... 31 0.36
At1g32040.1 68414.m03941 hypothetical protein 31 0.36
At3g03980.1 68416.m00419 short-chain dehydrogenase/reductase (SD... 31 0.62
At4g16140.1 68417.m02445 proline-rich family protein contains pr... 30 0.82
At1g17680.2 68414.m02189 transcription factor-related low simila... 30 0.82
At1g17680.1 68414.m02188 transcription factor-related low simila... 30 0.82
At3g04000.1 68416.m00421 short-chain dehydrogenase/reductase (SD... 30 1.1
At2g02750.1 68415.m00218 pentatricopeptide (PPR) repeat-containi... 30 1.1
At1g79670.2 68414.m09292 wall-associated kinase, putative simila... 29 1.9
At1g79670.1 68414.m09291 wall-associated kinase, putative simila... 29 1.9
At5g06060.1 68418.m00671 tropinone reductase, putative / tropine... 29 2.5
At1g24470.1 68414.m03082 short-chain dehydrogenase/reductase (SD... 28 3.3
At5g04070.1 68418.m00389 short-chain dehydrogenase/reductase (SD... 28 4.4
At3g03330.1 68416.m00331 short-chain dehydrogenase/reductase (SD... 28 4.4
At3g52115.1 68416.m05720 hypothetical protein 27 5.8
At3g15250.1 68416.m01926 expressed protein ; expression supporte... 27 5.8
At2g29525.2 68415.m03585 expressed protein 27 5.8
At2g29525.1 68415.m03586 expressed protein 27 5.8
At2g17845.1 68415.m02067 short-chain dehydrogenase/reductase (SD... 27 5.8
At1g80340.1 68414.m09405 gibberellin 3-beta-dioxygenase / gibber... 27 5.8
At1g24360.1 68414.m03072 3-oxoacyl-[acyl-carrier protein] reduct... 27 5.8
At1g16130.1 68414.m01933 wall-associated kinase, putative simila... 27 5.8
At3g46170.1 68416.m04996 short-chain dehydrogenase/reductase (SD... 27 7.7
>At5g18210.1 68418.m02137 short-chain dehydrogenase/reductase (SDR)
family protein similar to short-chain type
dehydrogenase/reductase SP:Q08632 [Picea abies]
Length = 277
Score = 37.1 bits (82), Expect = 0.007
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = +1
Query: 340 MSSSIDLSGTTYCVLSGASQGIGRAIAVEVAKLLGPKSVILLLARNKDQLAITAALCES 516
M+SS+ +++G+S+GIGRAIA+ +A+ LG K VI R+ + + A + S
Sbjct: 1 MASSVSSLAGRVAIVTGSSRGIGRAIAIHLAE-LGAKIVINYTTRSTEADQVAAEINSS 58
>At3g47350.1 68416.m05148 short-chain dehydrogenase/reductase (SDR)
family protein similar to sterol-binding dehydrogenase
steroleosin GI:15824408 from [Sesamum indicum]
Length = 308
Score = 33.5 bits (73), Expect = 0.088
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = +1
Query: 379 VLSGASQGIGRAIAVEVAKLLGPKSVILLLARNKDQLAITA 501
+++GAS GIG +A E AK G K + L+AR KD+L I A
Sbjct: 50 LITGASSGIGEHVAYEYAK-KGAK--LALVARRKDRLEIVA 87
>At3g47360.1 68416.m05149 short-chain dehydrogenase/reductase (SDR)
family protein similar to sterol-binding dehydrogenase
steroleosin GI:15824408 from [Sesamum indicum]
Length = 309
Score = 31.5 bits (68), Expect = 0.36
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 379 VLSGASQGIGRAIAVEVAKLLGPKSVILLLARNKDQLAITA 501
+++GAS GIG +A E AK + + L+AR +D+L I A
Sbjct: 51 LITGASSGIGEHVAYEYAK---KGAYLALVARRRDRLEIVA 88
>At1g32040.1 68414.m03941 hypothetical protein
Length = 408
Score = 31.5 bits (68), Expect = 0.36
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 55 EVGNKGIISNFEDNFQPSTEKLADSPQYLALLERKLKAVRSKNKVVENLSAYRADCIG 228
++ + +I++ P EKL +S QY L+A S NK+V + + C+G
Sbjct: 179 KIASANLIASCGGRILPPPEKLLESEQYAEASSFFLRAFSSMNKMVRSYDSTTRACLG 236
>At3g03980.1 68416.m00419 short-chain dehydrogenase/reductase (SDR)
family protein similar to short-chain type
dehydrogenase/reductase SP:Q08632 [Picea abies]
Length = 270
Score = 30.7 bits (66), Expect = 0.62
Identities = 15/35 (42%), Positives = 26/35 (74%)
Frame = +1
Query: 379 VLSGASQGIGRAIAVEVAKLLGPKSVILLLARNKD 483
+++G+S+GIGRAIA+ +A+ LG + VI ++ D
Sbjct: 20 IVTGSSRGIGRAIAIHLAE-LGARIVINYTSKAAD 53
>At4g16140.1 68417.m02445 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 164
Score = 30.3 bits (65), Expect = 0.82
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 362 PAPRTASCPAPPRASGG 412
P+P T +CP PP +SGG
Sbjct: 59 PSPTTTACPPPPSSSGG 75
>At1g17680.2 68414.m02189 transcription factor-related low
similarity to SP|P33339 Transcription factor tau 131 kDa
subunit (TFIIIC 131 kDa subunit) Saccharomyces
cerevisiae, transcription factor IIIC102 short isoform
[Homo sapiens] GI:18481637
Length = 896
Score = 30.3 bits (65), Expect = 0.82
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 52 SEVGNKGIISNFEDNFQP-STEKLADSPQYLALLERKLKAVRSKNKVVENLS 204
S+ ++G S ED+F+ S + P+Y AL ERK KA+ + N+S
Sbjct: 60 SDDDDEGDESEEEDDFEAGSVPNTFERPEYEALAERKRKALADSQRNPSNIS 111
>At1g17680.1 68414.m02188 transcription factor-related low
similarity to SP|P33339 Transcription factor tau 131 kDa
subunit (TFIIIC 131 kDa subunit) Saccharomyces
cerevisiae, transcription factor IIIC102 short isoform
[Homo sapiens] GI:18481637
Length = 896
Score = 30.3 bits (65), Expect = 0.82
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 52 SEVGNKGIISNFEDNFQP-STEKLADSPQYLALLERKLKAVRSKNKVVENLS 204
S+ ++G S ED+F+ S + P+Y AL ERK KA+ + N+S
Sbjct: 60 SDDDDEGDESEEEDDFEAGSVPNTFERPEYEALAERKRKALADSQRNPSNIS 111
>At3g04000.1 68416.m00421 short-chain dehydrogenase/reductase (SDR)
family protein similar to SP|Q08632 Short-chain type
dehydrogenase/reductase (EC 1.-.-.-) {Picea abies};
contains Pfam:PF00106 oxidoreductase, short chain
dehydrogenase/reductase family
Length = 272
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/27 (48%), Positives = 23/27 (85%)
Frame = +1
Query: 379 VLSGASQGIGRAIAVEVAKLLGPKSVI 459
+++G+S+GIGRAIA+ +A+ LG + V+
Sbjct: 20 IVTGSSRGIGRAIAIHLAE-LGARVVV 45
>At2g02750.1 68415.m00218 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 613
Score = 29.9 bits (64), Expect = 1.1
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +1
Query: 88 EDNFQPSTEKLADSPQYLALLERKLKAVRSKNKVVENLSAYRADCIGRLLREGCDLDPVI 267
E ++PSTE + L R +A +++ E S+ + +G + LDPV+
Sbjct: 500 EYGYKPSTEHIGCMIDLLGRSGRLREAKEVIDQMSEPSSSVYSSLLGSCRQH---LDPVL 556
Query: 268 GDTEADKLLEDKPES 312
G+ A KL E +PE+
Sbjct: 557 GEEAAMKLAELEPEN 571
>At1g79670.2 68414.m09292 wall-associated kinase, putative similar
to wall-associated kinase 4 GI:3355308 from [Arabidopsis
thaliana]; isoform contains non-consensus AT-acceptor
splice site.
Length = 714
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -2
Query: 250 RSPPGANDRCNRLCTLISFPPPCSSIGPLLIFFPTRLDIEVNPLTSRSMVENYL 89
+SPP ++ CNR+C I P P IG F ++ N TS + +L
Sbjct: 28 QSPPSSSTSCNRICGGIEIPFP-FGIGRRDCFLNDWYEVVCNSTTSGKSLAPFL 80
>At1g79670.1 68414.m09291 wall-associated kinase, putative similar
to wall-associated kinase 4 GI:3355308 from [Arabidopsis
thaliana]; isoform contains non-consensus AT-acceptor
splice site.
Length = 751
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -2
Query: 250 RSPPGANDRCNRLCTLISFPPPCSSIGPLLIFFPTRLDIEVNPLTSRSMVENYL 89
+SPP ++ CNR+C I P P IG F ++ N TS + +L
Sbjct: 28 QSPPSSSTSCNRICGGIEIPFP-FGIGRRDCFLNDWYEVVCNSTTSGKSLAPFL 80
>At5g06060.1 68418.m00671 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 264
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/44 (38%), Positives = 30/44 (68%)
Frame = +1
Query: 358 LSGTTYCVLSGASQGIGRAIAVEVAKLLGPKSVILLLARNKDQL 489
L+G T +++G ++GIGRA+ E+AK G K + +RN+++L
Sbjct: 9 LAGKT-ALVTGGTRGIGRAVVEELAK-FGAK--VHTCSRNQEEL 48
>At1g24470.1 68414.m03082 short-chain dehydrogenase/reductase (SDR)
family protein similar to b-keto acyl reductase
GI:2586127 from [Hordeum vulgare]
Length = 312
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/22 (50%), Positives = 19/22 (86%)
Frame = +1
Query: 370 TYCVLSGASQGIGRAIAVEVAK 435
++ +++GA++GIGRA A E+AK
Sbjct: 53 SWAMVTGATEGIGRAFAHELAK 74
>At5g04070.1 68418.m00389 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
Short-chain dehydrogenase/reductase (SDR) superfamily
Length = 359
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 346 SSIDLSGTTYCVLSGASQGIGRAIAVEVAK 435
S + S T CV++GA+ G+G+A A +++
Sbjct: 51 SKFNHSHTPVCVITGATSGLGKATAFALSR 80
>At3g03330.1 68416.m00331 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
Short-chain dehydrogenase/reductase (SDR) superfamily
Length = 328
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +1
Query: 382 LSGASQGIGRAIAVEVAKLLGPKSVILLLARNKDQL 489
++GAS+GIG +A + A L + ++L ARNK +L
Sbjct: 48 ITGASRGIGEILAKQFASL---DAKLILSARNKAEL 80
>At3g52115.1 68416.m05720 hypothetical protein
Length = 588
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 218 IASVVCSGRAAISTLLSGTQRPINYWRTNRS 310
I+ +V S AA LSG +RP + WR RS
Sbjct: 415 ISPIVRSPGAAKPPQLSGLKRPASIWRDTRS 445
>At3g15250.1 68416.m01926 expressed protein ; expression supported
by MPSS
Length = 217
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +1
Query: 154 RKLKAVRSKNKVVENLSAYRADCIGRLLREGCD 252
RK KAVR + K E R CIG L E CD
Sbjct: 183 RKKKAVRVRKKTEERR---RVSCIGGSLSETCD 212
>At2g29525.2 68415.m03585 expressed protein
Length = 251
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 241 PGANDRCNRLCTLISFPPPCSSIGPLLIFFP 149
PG N C L PPP + + LLI FP
Sbjct: 136 PGPNYHCREGSKLAKIPPPKNVLEVLLINFP 166
>At2g29525.1 68415.m03586 expressed protein
Length = 289
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 241 PGANDRCNRLCTLISFPPPCSSIGPLLIFFP 149
PG N C L PPP + + LLI FP
Sbjct: 136 PGPNYHCREGSKLAKIPPPKNVLEVLLINFP 166
>At2g17845.1 68415.m02067 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 312
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +1
Query: 379 VLSGASQGIGRAIAVEVAKLLGPKSVILLLARNKDQL 489
+++GAS GIGR + +++AK G K I+ AR D+L
Sbjct: 53 LVTGASSGIGREVCLDLAK-AGCK--IIAAARRVDRL 86
>At1g80340.1 68414.m09405 gibberellin 3-beta-dioxygenase /
gibberellin 3 beta-hydroxylase (GA4H) nearly identical
to gibberellin 3 beta-hydroxylase GI:3982753 GB:AAC83647
[Arabidopsis thaliana]
Length = 347
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 46 WGS-EVGNKGIISNFEDNFQPSTEKLADSPQYLALLERKLKAVRSKNKV 189
WG+ ++ N G+ S D+ + T L P ++RKLKA RS+N V
Sbjct: 71 WGAFQITNHGVPSRLLDDIEFLTGSLFRLP-----VQRKLKAARSENGV 114
>At1g24360.1 68414.m03072 3-oxoacyl-[acyl-carrier protein]
reductase, chloroplast / 3-ketoacyl-acyl carrier protein
reductase identical to 3-oxoacyl-[acyl-carrier protein]
reductase SP:P33207 from [Arabidopsis thaliana]
Length = 319
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +1
Query: 379 VLSGASQGIGRAIAVEVAK 435
V++GAS+GIG+AIA+ + K
Sbjct: 80 VITGASRGIGKAIALALGK 98
>At1g16130.1 68414.m01933 wall-associated kinase, putative similar
to putative serine/threonine-specific protein kinase
GI:7270012 from [Arabidopsis thaliana]
Length = 748
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -2
Query: 250 RSPPGANDRCNRLCTLISFPPP 185
R PP DRCNR+C IS P P
Sbjct: 29 RQPP---DRCNRVCGEISIPFP 47
>At3g46170.1 68416.m04996 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 288
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +1
Query: 379 VLSGASQGIGRAIAVEVAKLLGPKSVILLLARNKDQL 489
+++GAS GIGR I +++ K G K I+ +AR D+L
Sbjct: 32 LVTGASSGIGREICLDLGK-AGCK--IIAVARRVDRL 65
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,382,197
Number of Sequences: 28952
Number of extensions: 287831
Number of successful extensions: 953
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -