Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311F12f
(397 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c... 190 7e-50
SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomy... 27 1.4
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 26 2.4
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 4.3
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 25 4.3
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 25 5.6
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb... 25 5.6
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 24 7.4
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p... 24 7.4
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces... 24 9.8
>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 433
Score = 190 bits (463), Expect = 7e-50
Identities = 86/124 (69%), Positives = 101/124 (81%)
Frame = +1
Query: 22 CLDAKFRFDDXAEFRQKELFSLRDTTQEDPKEIEAAKYNLNYIALDGNIGCMVNGAGLAM 201
C+DAK FDD AEFR +F LRD +QEDP E AAK LN+I LDGNIGC+VNGAGLAM
Sbjct: 240 CMDAKLNFDDNAEFRHSNIFVLRDISQEDPDEARAAKVGLNFIKLDGNIGCLVNGAGLAM 299
Query: 202 ATMDIIKLYGGDPANFLDVGGGATXQAVSEAFKIILSDPKVTAILVNIFGGIMRCDVXAE 381
ATMDIIKL+GG+PANFLDVGG A +A+ EAF +I +DPK TAI VNIFGGI+RCDV A+
Sbjct: 300 ATMDIIKLHGGEPANFLDVGGNANAEAIREAFSLITNDPKTTAIFVNIFGGIVRCDVIAK 359
Query: 382 GIIN 393
G+I+
Sbjct: 360 GLIS 363
>SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 327
Score = 26.6 bits (56), Expect = 1.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 363 PHNTTKNVHQNSCHL 319
P+NTTK++H SC L
Sbjct: 230 PYNTTKSIHGESCSL 244
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.8 bits (54), Expect = 2.4
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 277 QAVSEAFKIILSDPKVTAILVNIFGGIMRCDVXAEG 384
+ + E II D K T +LVN G + CD G
Sbjct: 429 KTLKEEHNIIHRDVKPTNVLVNSNGQVKLCDFGVSG 464
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 4.3
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 389 MIPSAXTSHLI-IPPKMFTKIAVTFGSERMILNASETAW 276
M SA H + +PP++ + T G ++N++ T W
Sbjct: 567 MTQSAKIGHYMKVPPRLVAALLFTSGIWSSLVNSAVTGW 605
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.0 bits (52), Expect = 4.3
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 73 ELFSLRDTTQEDPKEIEAAKYNL 141
E SLR T DPKE+ AKY+L
Sbjct: 35 EFLSLRQT--HDPKELLQAKYDL 55
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 24.6 bits (51), Expect = 5.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 294 VQNHSLRPEGDSYFGEHFWWYY 359
++N+ L PEG FG WW Y
Sbjct: 95 IRNY-LGPEGIKQFGGSNWWLY 115
>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 24.6 bits (51), Expect = 5.6
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 354 TTKNVHQNSCHLRV*ENDFERLRDSLXSSASTDIQEV 244
TTK++ NS H++ N R R + D++E+
Sbjct: 26 TTKSIRMNSIHIKKKSNRSFRRRKVFGNEKEFDLEEL 62
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 24.2 bits (50), Expect = 7.4
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = -3
Query: 368 SHLIIPPKMFTKIAVTFGSERMILNASETAWXVAPPPTSKKLAGSP 231
++ ++P K T +ER L++S + PP T K+ P
Sbjct: 60 TNFVVPEKQKTSKLALLAAERKKLHSSFPSTQQQPPKTEKEKEKEP 105
>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 24.2 bits (50), Expect = 7.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 332 IAVTFGSERMILNASETAWXVAPPPTSKKL 243
IAV E+ LN+ ET + P ++KKL
Sbjct: 192 IAVPLNLEKQFLNSYETLTDLVIPRSAKKL 221
>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 23.8 bits (49), Expect = 9.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 40 RFDDXAEFRQKELFSLRDTTQEDPKEI 120
+FDD R + L +LRD E K I
Sbjct: 276 KFDDIIPDRNQLLITLRDLASESSKSI 302
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,449,648
Number of Sequences: 5004
Number of extensions: 25203
Number of successful extensions: 65
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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