Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311F12f
(397 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0655 + 24761323-24761424,24761565-24761675,24762361-247624... 141 2e-34
03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238 29 1.0
03_05_0774 - 27615899-27617134 29 1.4
07_01_0729 - 5560405-5561235 28 2.4
09_06_0172 + 21329904-21331512,21331595-21331740,21332333-213325... 27 4.1
06_03_0021 + 15520342-15520443,15522217-15522867,15522980-155231... 27 5.5
09_04_0229 - 15867333-15868033,15868097-15869249 27 7.2
06_01_0618 - 4492057-4492590,4492780-4493192,4493714-4494026,449... 27 7.2
03_01_0182 - 1466097-1466147,1466197-1466331,1466659-1466777,146... 27 7.2
09_05_0017 - 20095011-20095667 26 9.6
>02_04_0655 +
24761323-24761424,24761565-24761675,24762361-24762472,
24763049-24763113,24763727-24763804,24764550-24764624,
24764747-24764899,24764988-24765122,24765325-24765495
Length = 333
Score = 141 bits (341), Expect = 2e-34
Identities = 64/82 (78%), Positives = 72/82 (87%)
Frame = +1
Query: 28 DAKFRFDDXAEFRQKELFSLRDTTQEDPKEIEAAKYNLNYIALDGNIGCMVNGAGLAMAT 207
DAK FDD A FRQKE+F++RDTTQEDP+E+ AAK +LNYI LDG IGCMVNGAGLAMAT
Sbjct: 248 DAKLNFDDNAAFRQKEIFAMRDTTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMAT 307
Query: 208 MDIIKLYGGDPANFLDVGGGAT 273
MDIIKL+GG PANFLDVGG A+
Sbjct: 308 MDIIKLHGGTPANFLDVGGSAS 329
>03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238
Length = 697
Score = 29.5 bits (63), Expect = 1.0
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Frame = +1
Query: 187 AGLAMATMD----IIKLYGG-DPANFLDVGGGATXQAVSEAFKIILSDPKVTAILVNIF 348
AGL A D +++ +GG PA+ G G+ AV+ A++++LSD + T ++V IF
Sbjct: 78 AGLGGAFRDNVRWLLRQWGGASPASPAAGGPGSASAAVAVAWRVLLSDDR-TGVVVPIF 135
>03_05_0774 - 27615899-27617134
Length = 411
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -3
Query: 353 PPKMFTKIAVTFGSERMILNASETAWXVAPPPTSKKLAGSPP*SLIISIVAIAN 192
PP+ T++A T + A A APPP ++ A + + I +VA+A+
Sbjct: 95 PPQARTEVAATARKVDGAIGAMAVAHRDAPPPPARVEAAAKKMDMEIGVVAVAH 148
>07_01_0729 - 5560405-5561235
Length = 276
Score = 28.3 bits (60), Expect = 2.4
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Frame = +1
Query: 28 DAKFRFDDXAEFR--QKELFSLRDTTQEDPKEIEAAKYNLNYIALDGNIGCMVNGAGLAM 201
+ +F D+ E Q+ F + + +E+P+E+E A + + + +G +V+ G+
Sbjct: 82 EVEFEVDEEEEEEDPQEVEFEVEEEEEEEPQEVEFAADDGSDDGVVVVVGDLVDDGGVME 141
Query: 202 ATMDIIKLYGGDPANFLDVGGGATXQAVSEA 294
+D + + D N GGG+ VS+A
Sbjct: 142 GEVDYVVEHFEDDDN----GGGSFDDLVSDA 168
>09_06_0172 +
21329904-21331512,21331595-21331740,21332333-21332556,
21333689-21334448
Length = 912
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 118 IEAAKYNLNYIALDGNIGCMVNGAGLAMATMDIIK 222
+E + L+ I+ NI M+NGA A MD+IK
Sbjct: 669 LECHQIQLHAISHAKNIDSMINGAKFGEAHMDLIK 703
>06_03_0021 +
15520342-15520443,15522217-15522867,15522980-15523186,
15523698-15523913,15523992-15524214,15525052-15525299,
15525385-15525563,15525803-15526056,15526237-15526388
Length = 743
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 256 VGGGATXQAVSEAFKIILSDPKVTAILVNIFGGIMRCD 369
VGG A + V F + D T + +I GG+M CD
Sbjct: 236 VGGKAMEELVKGGFIQGVLDITTTEVADHIVGGVMACD 273
>09_04_0229 - 15867333-15868033,15868097-15869249
Length = 617
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 250 LDVGGGATXQAVSEAFKIILSDPKVTAILVN 342
+DV GGA QA A I+ +DP+V A + +
Sbjct: 133 VDVIGGAVDQAFDRADLIMSNDPRVKAAVAD 163
>06_01_0618 -
4492057-4492590,4492780-4493192,4493714-4494026,
4495257-4495828,4498324-4498600
Length = 702
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 353 PPKMFTKIAVTFGSERMILNASETAWXVAPPPTSKKLAGSPP 228
PP T A FG++ A+ T A ++++ AGSPP
Sbjct: 144 PPHHATATAPPFGADHTSARAALTGILTAIFSSARRAAGSPP 185
>03_01_0182 -
1466097-1466147,1466197-1466331,1466659-1466777,
1467005-1467064,1467206-1467296,1467767-1467955,
1469310-1469393,1469540-1469701,1469790-1469933,
1470053-1470247
Length = 409
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 166 IGCMVNGAGLAMATMDIIKLYGGDPANFLDVGGGATXQAVSEAFKI 303
IGC V GL A +DI+ GGD A+ +++ G+T A + K+
Sbjct: 122 IGCCVRVDGLDDA-VDIVGT-GGDGADTVNISTGSTILAAAAGAKV 165
>09_05_0017 - 20095011-20095667
Length = 218
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 299 LNASETAWXVAPPPTSKKLAGS 234
LN +++AW + P P S LAG+
Sbjct: 92 LNFADSAWRMPPVPASAALAGA 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,637,894
Number of Sequences: 37544
Number of extensions: 186292
Number of successful extensions: 589
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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