Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311F12f
         (397 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4318| Best HMM Match : Ligase_CoA (HMM E-Value=0)                  176   5e-45
SB_53083| Best HMM Match : No HMM Matches (HMM E-Value=.)             116   5e-27
SB_23802| Best HMM Match : No HMM Matches (HMM E-Value=.)              87   6e-18
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_38316| Best HMM Match : Syja_N (HMM E-Value=0.00032)                27   7.3  
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_49620| Best HMM Match : Ank (HMM E-Value=9.3e-16)                   26   9.6  
SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)               26   9.6  

>SB_4318| Best HMM Match : Ligase_CoA (HMM E-Value=0)
          Length = 229

 Score =  176 bits (429), Expect = 5e-45
 Identities = 78/125 (62%), Positives = 99/125 (79%)
 Frame = +1

Query: 22  CLDAKFRFDDXAEFRQKELFSLRDTTQEDPKEIEAAKYNLNYIALDGNIGCMVNGAGLAM 201
           C DAKF FDD A++RQK +F L D ++ DP+E+EAA+++L+YIA+DGNI C+VNGAGLAM
Sbjct: 53  CFDAKFNFDDNAKYRQKAIFDLDDKSESDPREVEAAEFDLSYIAMDGNIACLVNGAGLAM 112

Query: 202 ATMDIIKLYGGDPANFLDVGGGATXQAVSEAFKIILSDPKVTAILVNIFGGIMRCDVXAE 381
           ATMDIIKL+GG+P+NFLD+GGG   + V  A KI+  DP+V  ILVNIFGGI+ C V A 
Sbjct: 113 ATMDIIKLHGGEPSNFLDLGGGIKEEGVLHALKIVSKDPRVKVILVNIFGGIVDCSVVAS 172

Query: 382 GIINA 396
           GI  A
Sbjct: 173 GITKA 177


>SB_53083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score =  116 bits (280), Expect = 5e-27
 Identities = 55/72 (76%), Positives = 62/72 (86%)
 Frame = +1

Query: 181 NGAGLAMATMDIIKLYGGDPANFLDVGGGATXQAVSEAFKIILSDPKVTAILVNIFGGIM 360
           NGAGLAMATMDII+L+GG+PANFLD+GGGA+ + V  AFKII  D KV AILVNIFGGIM
Sbjct: 151 NGAGLAMATMDIIQLHGGEPANFLDIGGGASIEQVEAAFKIITEDSKVHAILVNIFGGIM 210

Query: 361 RCDVXAEGIINA 396
           RCD+ AEGII A
Sbjct: 211 RCDIIAEGIIAA 222


>SB_23802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 86.6 bits (205), Expect = 6e-18
 Identities = 35/60 (58%), Positives = 48/60 (80%)
 Frame = +1

Query: 4   LTGQFFCLDAKFRFDDXAEFRQKELFSLRDTTQEDPKEIEAAKYNLNYIALDGNIGCMVN 183
           L G+  C+D K  FDD A +RQ+E+F LRD +Q+DP+E+EAAK+NLNYI LDG+IGC+ +
Sbjct: 52  LLGRVVCMDCKLLFDDNASYRQQEVFDLRDWSQDDPREVEAAKHNLNYIGLDGSIGCLAH 111


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 46   DDXAEFRQKELFSLRDTTQEDPKEIEAAKYNLNYIALDGN 165
            DD  E R+ +L +L DTT +  +  EA KY +   A D N
Sbjct: 2503 DDEVEDRKPDLQTLNDTTADLIESCEADKYIIEGDAQDFN 2542


>SB_38316| Best HMM Match : Syja_N (HMM E-Value=0.00032)
          Length = 567

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 49  DXAEFRQKELFSLRDTTQEDPKEIEAAKYNLNYIALDGNIGC 174
           D A+ +QK+    +++TQ DP+  E AK   N    D    C
Sbjct: 289 DLAKKQQKQDHRSKESTQRDPEGREKAKQENNGAVKDDKDAC 330


>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3003

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 19   FCLDAKFRFDDXAEFRQKELFSLRDTTQED 108
            +C++ K  FDD ++  QK L S ++  + D
Sbjct: 2012 YCVECKTNFDDLSKITQKVLASRKELLEYD 2041


>SB_49620| Best HMM Match : Ank (HMM E-Value=9.3e-16)
          Length = 153

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 306 NDFERLRDSLXSSASTDIQEVSGVTPVEF 220
           N+F+  +  +  SA+ DI + +G TPV++
Sbjct: 91  NNFDMAKFLMKKSANPDIADYNGKTPVDY 119


>SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)
          Length = 905

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 266 PPPTSKKLAGSPP*SLIISIVAIANPAPLTIHP 168
           PPP  + L G PP  +   ++ +  P P   HP
Sbjct: 364 PPPGMQTLMGLPPTGVPPQMLPMMPPRPTVYHP 396


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,885,340
Number of Sequences: 59808
Number of extensions: 188218
Number of successful extensions: 482
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)