Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311F12f
         (397 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform ...    23   4.1  
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    23   4.1  
CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.           23   5.4  

>AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform B
           protein.
          Length = 755

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 10/44 (22%), Positives = 18/44 (40%)
 Frame = -3

Query: 359 IIPPKMFTKIAVTFGSERMILNASETAWXVAPPPTSKKLAGSPP 228
           +  P  + K  V  G + +I    E ++   P P   ++   PP
Sbjct: 548 LFTPNTYNKFLVAPGGDHLISLIDEISYVSPPSPMLSQINDIPP 591


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +1

Query: 130 KYNLNYIALDGNIGCMVNGAGLAMATMDIIK 222
           K + NYI     +GCM    GL     D  K
Sbjct: 524 KEHPNYIDCYLRLGCMARDKGLIFVASDFFK 554


>CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.
          Length = 376

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 23/93 (24%), Positives = 35/93 (37%)
 Frame = +1

Query: 94  TTQEDPKEIEAAKYNLNYIALDGNIGCMVNGAGLAMATMDIIKLYGGDPANFLDVGGGAT 273
           TT  + + +   K  L Y+ALD            A A+    K Y       + +G    
Sbjct: 202 TTTAEREIVRDIKEKLCYVALD-----FEQEMQAAAASSSSEKSYELPDGQVITIGN-ER 255

Query: 274 XQAVSEAFKIILSDPKVTAILVNIFGGIMRCDV 372
            +A    F+      + T I   ++  IMRCDV
Sbjct: 256 FRAPEALFQPSFLGMESTGIHETVYNSIMRCDV 288


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 365,804
Number of Sequences: 2352
Number of extensions: 5998
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 31212099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)