Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311F12f
         (397 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   0.96 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   3.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   3.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   9.0  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 0.96
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = +1

Query: 16  FFCLDAKFRFDDXAEFRQKELFSLRDTTQEDPKEIE 123
           +FCLD K   DD      +   S    + E P  ++
Sbjct: 428 YFCLDGKLPHDDQPPLSPQSDSSSSSRSAESPMSVQ 463


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 139 LNYIALDGNIGCMVNGAGLAMATMDIIKL 225
           L  I LDGN    +NG   ++A++ ++ L
Sbjct: 528 LEAIRLDGNFLSDINGVFTSIASLLLLNL 556


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 106 DPKEIEAAKYNLNYIALDGNIGCMVNGAGLAMATMDII 219
           D   + A+   L+Y+ L G + C +    L +   DI+
Sbjct: 683 DTPVVRASGRELSYVLLSGILLCYLVTFALVLRPTDIV 720


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -3

Query: 332 IAVTFGSERMILNASETAWXVAPPPTSKKLAGSP 231
           +A  +GS+  I+N+S        P ++ +   SP
Sbjct: 561 VATMYGSDEEIINSSNDEGGKTSPNSAVRKCMSP 594


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 189 WISYGYDGY 215
           W S+ YDGY
Sbjct: 149 WASWTYDGY 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,697
Number of Sequences: 438
Number of extensions: 2234
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)