Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311F12f
(397 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g20420.1 68415.m02383 succinyl-CoA ligase [GDP-forming] beta-... 199 6e-52
At5g66420.1 68418.m08377 expressed protein 29 1.5
At4g16990.3 68417.m02563 disease resistance protein (TIR-NBS cla... 27 3.4
At4g16990.2 68417.m02562 disease resistance protein (TIR-NBS cla... 27 3.4
At4g16990.1 68417.m02561 disease resistance protein (TIR-NBS cla... 27 3.4
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 27 3.4
At5g21930.1 68418.m02545 ATPase E1-E2 type family protein / halo... 26 7.9
At5g21482.1 68418.m02536 cytokinin oxidase, putative (CKX5) cont... 26 7.9
At4g34440.1 68417.m04894 protein kinase family protein contains ... 26 7.9
At2g32640.2 68415.m03985 expressed protein 26 7.9
At2g32640.1 68415.m03984 expressed protein 26 7.9
At2g16630.1 68415.m01909 proline-rich family protein contains pr... 26 7.9
>At2g20420.1 68415.m02383 succinyl-CoA ligase [GDP-forming]
beta-chain, mitochondrial, putative / succinyl-CoA
synthetase, beta chain, putative / SCS-beta, putative
identical to SP|O82662 Succinyl-CoA ligase [GDP-forming]
beta-chain, mitochondrial precursor (EC 6.2.1.4)
(Succinyl-CoA synthetase, beta chain) (SCS- beta)
{Arabidopsis thaliana}; similar to SP|O97580
Succinyl-CoA ligase [ADP-forming] beta-chain,
mitochondrial precursor (EC 6.2.1.5) {Sus scrofa};
contains Pfam profiles PF00549: CoA-ligase, PF02222:
ATP-grasp domain
Length = 421
Score = 199 bits (485), Expect = 6e-52
Identities = 94/130 (72%), Positives = 105/130 (80%)
Frame = +1
Query: 7 TGQFFCLDAKFRFDDXAEFRQKELFSLRDTTQEDPKEIEAAKYNLNYIALDGNIGCMVNG 186
T Q DAK FDD A FRQKE+F++RD TQEDP+E+ AAK +LNYI LDG IGCMVNG
Sbjct: 240 TNQLVAADAKLNFDDNAAFRQKEVFAMRDPTQEDPREVAAAKVDLNYIGLDGEIGCMVNG 299
Query: 187 AGLAMATMDIIKLYGGDPANFLDVGGGATXQAVSEAFKIILSDPKVTAILVNIFGGIMRC 366
AGLAMATMDIIKL+GG PANFLDVGG A+ V EAFKI+ SD KV AILVNIFGGIM+C
Sbjct: 300 AGLAMATMDIIKLHGGTPANFLDVGGNASEHQVVEAFKILTSDDKVKAILVNIFGGIMKC 359
Query: 367 DVXAEGIINA 396
DV A GI+NA
Sbjct: 360 DVIASGIVNA 369
>At5g66420.1 68418.m08377 expressed protein
Length = 655
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 256 VGGGATXQAVSEAFKIILSDPKVTAILVNIFGGIMRCD 369
VGG A V E F + D T + ++ GG+M CD
Sbjct: 150 VGGRAMESLVKEGFIQGVMDITTTEVADHLVGGVMACD 187
>At4g16990.3 68417.m02563 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 801
Score = 27.5 bits (58), Expect = 3.4
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +3
Query: 348 WWYYEVRRXCRRYH*C 395
WWY + R C++Y+ C
Sbjct: 473 WWYENLERVCKKYNIC 488
>At4g16990.2 68417.m02562 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 796
Score = 27.5 bits (58), Expect = 3.4
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +3
Query: 348 WWYYEVRRXCRRYH*C 395
WWY + R C++Y+ C
Sbjct: 473 WWYENLERVCKKYNIC 488
>At4g16990.1 68417.m02561 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 520
Score = 27.5 bits (58), Expect = 3.4
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +3
Query: 348 WWYYEVRRXCRRYH*C 395
WWY + R C++Y+ C
Sbjct: 473 WWYENLERVCKKYNIC 488
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 27.5 bits (58), Expect = 3.4
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 363 PHNTTKNVHQNSCHLRV*ENDFERLRDSLXSSASTDIQEVSGVTPVEFDYIH 208
PH+ HQ S L+ E D +L L S T I + +GVT +F I+
Sbjct: 2601 PHSNFDKTHQLSTKLKETEEDRMQLAQELL-SLCTSILKAAGVTGEDFTDIN 2651
>At5g21930.1 68418.m02545 ATPase E1-E2 type family protein /
haloacid dehalogenase-like hydrolase family protein /
heavy-metal-associated domain-containing protein
contains InterPro accession IPR001757: ATPase, E1-E2
type; contains Pfam profiles PF00403:
Heavy-metal-associated domain, PF00702: haloacid
dehalogenase-like hydrolase
Length = 883
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +1
Query: 202 ATMDIIKLYGGDPANFLDVGGGATXQAVSEAFKIILSDPKVTAILVNI 345
++++ +K D LDV G V+ +++SD +V + +VN+
Sbjct: 64 SSIESVKSITSDTPILLDVSGMMCGGCVARVKSVLMSDDRVASAVVNM 111
>At5g21482.1 68418.m02536 cytokinin oxidase, putative (CKX5)
contains Pfam profile: PF01565 FAD binding domain;
identical to cytokinin oxidase (CKX5) [Arabidopsis
thaliana] gi|11120514|gb|AAG30908; similar to
Swiss-Prot:Q9LTS3 cytokinin oxidase 3 precursor (CKO
3)[Arabidopsis thaliana]
Length = 524
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 169 GCMVNGAGLAMATMDIIKLYGGDPANFLDVGGGATXQAV 285
G +V+ + A ++ L GGD F+DV GGA + V
Sbjct: 107 GLVVDMSTTAENHFEVGYLSGGDATAFVDVSGGALWEDV 145
>At4g34440.1 68417.m04894 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 670
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 269 APPPTSKKLAGSPP*SLIISIVAIANPAPLT 177
+PPP SPP S S +ANP+P T
Sbjct: 56 SPPPAPPTQETSPPTSPSSSPPVVANPSPQT 86
>At2g32640.2 68415.m03985 expressed protein
Length = 385
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 70 KELFSLRDTTQEDPKEIEAAKYNLNYIALDGNIG 171
KEL +R T+++ +E+ AAK+N N + N+G
Sbjct: 159 KELTEVRVLTEDEIEEVIAAKFNPNRCGFE-NLG 191
>At2g32640.1 68415.m03984 expressed protein
Length = 585
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 70 KELFSLRDTTQEDPKEIEAAKYNLNYIALDGNIG 171
KEL +R T+++ +E+ AAK+N N + N+G
Sbjct: 159 KELTEVRVLTEDEIEEVIAAKFNPNRCGFE-NLG 191
>At2g16630.1 68415.m01909 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 359
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 266 PPPTSKKLAGSPP*SLIISIVAIANPAPLTIHPMF 162
PPP ++ PP +L +V + N P+T P F
Sbjct: 190 PPPKVPVISPDPPTTLPPPLVPVINLPPVTSPPQF 224
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,638,355
Number of Sequences: 28952
Number of extensions: 142665
Number of successful extensions: 362
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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