Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311F11f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)                33   0.11 
SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_49531| Best HMM Match : C2 (HMM E-Value=2.9e-13)                    29   1.8  
SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)                     29   1.8  
SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12)                 29   2.3  
SB_59310| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_45866| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   4.1  
SB_30668| Best HMM Match : NIF3 (HMM E-Value=5.1)                      28   4.1  
SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)                28   4.1  
SB_25017| Best HMM Match : VirB (HMM E-Value=1.3)                      28   5.4  
SB_23606| Best HMM Match : VirB (HMM E-Value=1.3)                      28   5.4  
SB_47757| Best HMM Match : TIR (HMM E-Value=3.3)                       27   7.1  
SB_42959| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_32284| Best HMM Match : FGGY_N (HMM E-Value=2.6e-07)                27   7.1  
SB_57728| Best HMM Match : Usp (HMM E-Value=3.9e-20)                   27   7.1  
SB_25931| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_16070| Best HMM Match : IncA (HMM E-Value=0.43)                     27   7.1  
SB_25003| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)                   27   9.4  
SB_31443| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 287  LQPALRCISSTAQHEQQIVMQSDAYIPQCVRDE 385
            +Q AL CI    QHE  +VM+ D ++ +CV+D+
Sbjct: 1143 IQKALECIPPNVQHE--LVMELDGHVLKCVKDQ 1173


>SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 956

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +3

Query: 324 NTNNRSSCKATPTYLSAYGMSGVGSVP-TTGFGTQP---SPYAYSSYNGGLSQTFTPTQQ 491
           N   + +  +TP+  S  G   V SVP  T   +QP   SP   SS +  ++  F PTQ 
Sbjct: 343 NLVGQQTASSTPSTTSLLGQQAVSSVPFPTNLLSQPSITSPAVSSSSSQPVTNLFGPTQS 402

Query: 492 DYSN 503
             S+
Sbjct: 403 SASS 406


>SB_49531| Best HMM Match : C2 (HMM E-Value=2.9e-13)
          Length = 752

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 112 TAPAA*KARCGVRGFARQTWRCTGKRYHTTRPRCRTNTTIVCSS 243
           T   A  A+  +R   +Q +RC   +  T   RC + TT++CSS
Sbjct: 702 TTECAVCAKSIIRKPGKQAYRCKDCKM-TCHKRCHSQTTVICSS 744


>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
          Length = 231

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +3

Query: 297 PYAAYPPPHNTNNRSSCKATPTYLSAYGMSGVGS-VPTTGFGTQPSPYAYSSYNGGLSQT 473
           P  +Y P  +  + +S   T +Y S    +   S  PT  +   PS  + +SY    S T
Sbjct: 82  PTTSYTPTPSYTSTTSYTPTTSYTSTTSYTPTPSYTPTPSYTPTPSYTSTTSYTPTTSYT 141

Query: 474 FTPTQQDYSNYAA 512
            TP+    ++Y +
Sbjct: 142 PTPSYTSTTSYTS 154



 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +3

Query: 306 AYPPPHNTNNRSSCKATPTYLSAYGMSGVGS-VPTTGFGTQPSPYAYSSYNGGLSQTFTP 482
           +Y P  +     S   TP+Y S    +   S  PT  + +  S  + +SY    S T TP
Sbjct: 109 SYTPTPSYTPTPSYTPTPSYTSTTSYTPTTSYTPTPSYTSTTSYTSTTSYTSTTSYTSTP 168

Query: 483 TQQDYSNYAA 512
           +    ++Y +
Sbjct: 169 SYTSTTSYTS 178


>SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12)
          Length = 654

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = -2

Query: 211 SAVWSYGSVSPYSATSASQSPGLRTSLFTPPVLSSFINQATAEDEEVAHRPPDDVKGSAR 32
           ++ WS G  S      A        SL  P  LS  INQ   E + V+    DD + S +
Sbjct: 306 ASTWSQGKTSTEHLVEAESQEQREFSLGNPETLSGVINQVDKEADAVS---VDDGEPSEK 362

Query: 31  PPK 23
            P+
Sbjct: 363 KPR 365


>SB_59310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/65 (20%), Positives = 24/65 (36%)
 Frame = +2

Query: 281 WSLQPALRCISSTAQHEQQIVMQSDAYIPQCVRDEWSWKCAHHRIRHSALTIRIFFIQWR 460
           + L  A++C+     H   +V         C     + KC    I H+ + +  +  QW+
Sbjct: 57  FGLSHAMKCLFRPITHNGMLVSAYHTQWNACFGLSHAMKCLFRPITHNGMLVSAYHTQWK 116

Query: 461 TIANL 475
               L
Sbjct: 117 ACFGL 121


>SB_45866| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 388

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +3

Query: 300 YAAYPPPHNTNNRSSCKA--TPTYLSAYGMS-GVGSVPTTGFGTQPSP 434
           + + P P NTNN    K+  +PT+L  + +  G G    T   TQ SP
Sbjct: 264 FPSNPVPLNTNNGRKIKSGPSPTHLETFQVDLGPGVQTVTAVATQGSP 311


>SB_30668| Best HMM Match : NIF3 (HMM E-Value=5.1)
          Length = 1318

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
 Frame = +3

Query: 294 QPYAAYPPPHNTNNRSSCKATPTYLSAYGMSGVGSV-PTTGFGTQPSPYA--YSSYNGGL 464
           +P+AA P P N         TP++    GM  + +V P+   G    P+A   S  N G+
Sbjct: 761 RPFAATPSPRNEGMDRLSAVTPSHRGNEGMDRLSAVTPSPRNGGMDRPFAGTPSPRNEGM 820

Query: 465 SQTFTPTQQDYSNYAAG 515
            +    T     N   G
Sbjct: 821 DRLSAVTPSHRGNEGPG 837


>SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)
          Length = 2293

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
 Frame = +3

Query: 312  PPPHNTNNRS----SCKATPTYLSAYGMSGVGSVPTTGFGTQP--SPYA-YSSYNGGLSQ 470
            PPP  T+ +     S  A  T     G  G   VP+TG+G  P   PY+ Y  Y G    
Sbjct: 1201 PPPVATHLKGPPVVSGIAQNTMTGHSGNLGSSRVPSTGYGANPYNKPYSGYGHYTGYQQS 1260

Query: 471  T---FTPTQQDYSNYAA 512
            T   F P+  + + Y A
Sbjct: 1261 TGFGFRPSPYNSAAYLA 1277


>SB_25017| Best HMM Match : VirB (HMM E-Value=1.3)
          Length = 136

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 118 VLSSFINQATAEDEEVAHRPPDDVKGSARPPKVV 17
           +L+  I+   A   E A  PPD V+G   PP VV
Sbjct: 7   ILAVIISVTIAAPTEYARGPPDVVQGLRGPPDVV 40


>SB_23606| Best HMM Match : VirB (HMM E-Value=1.3)
          Length = 205

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 118 VLSSFINQATAEDEEVAHRPPDDVKGSARPPKVV 17
           +L+  I+   A   E A  PPD V+G   PP VV
Sbjct: 7   ILAVIISVTIAAPTEYARGPPDVVQGLRGPPDVV 40


>SB_47757| Best HMM Match : TIR (HMM E-Value=3.3)
          Length = 221

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 148 GLRTSLFTPPVLSSFINQATAEDEEVAHRPPDDVKGSARPPKV 20
           G+++S  +P +LS   NQ+TAE +E+        +   + PKV
Sbjct: 107 GIKSSSRSPAILSEVYNQSTAEWDELGQLLEVYQRVKVKDPKV 149


>SB_42959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +3

Query: 333 NRSSCKATPTYLSAYGMSGVGSVPTTGFGTQPSPYAYSSYNGGLSQTFTPTQQDYS 500
           N  +   TPT +    M G+G  P     T   P    SY     QT++ +QQ +S
Sbjct: 15  NNQNMPQTPTLMMQRQMQGMGMTPQPQQQTPSMPGQSPSY----QQTYSQSQQQFS 66


>SB_32284| Best HMM Match : FGGY_N (HMM E-Value=2.6e-07)
          Length = 582

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 353 DAYIPQCVRDEWSWKCAHHRIRHSALTIRIFFIQ-WR 460
           D Y  +C  D ++W  ++HR+     T R + +  WR
Sbjct: 287 DDYNDKCDDDSYAWNASYHRLDEREWTSRQYVVYVWR 323


>SB_57728| Best HMM Match : Usp (HMM E-Value=3.9e-20)
          Length = 744

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = +3

Query: 318 PHNTNNRSSCKATPTYLSAYGMSGVGSVPTTGFGTQPSPYAYSSYNGGLS 467
           PH T  R     TP  L+  GMS  G+VP    GT P  +   S +GG+S
Sbjct: 33  PHGTV-RLGRHGTPP-LTHGGMSPHGTVPICRHGTPPLTHGGVSPHGGVS 80


>SB_25931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 988

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 127 TPPVLSSFINQATAEDEEVAHRPPDD 50
           +PP+ +  IN+    D+E  HR P D
Sbjct: 894 SPPIATQVINEKEKNDKESGHRSPFD 919


>SB_16070| Best HMM Match : IncA (HMM E-Value=0.43)
          Length = 895

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 418 ALSPHHTHILHTMEDYRKPSLLHNKIIVI 504
           AL  +H    H    +RKP++LH  ++V+
Sbjct: 680 ALRVYHQIARHQSHSWRKPAILHAPVVVV 708


>SB_25003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/73 (23%), Positives = 29/73 (39%)
 Frame = +3

Query: 300 YAAYPPPHNTNNRSSCKATPTYLSAYGMSGVGSVPTTGFGTQPSPYAYSSYNGGLSQTFT 479
           Y+ YP  +  +   +      +L+ Y  SG  +     +   P+ Y YS +  G   +  
Sbjct: 82  YSGYPNGYQYSGHPNGYQYSGHLNGYQYSGHPN--GYQYSGHPNGYQYSGHPNGYQYSGH 139

Query: 480 PTQQDYSNYAAGY 518
           P    YS +  GY
Sbjct: 140 PNGYQYSGHPNGY 152


>SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -2

Query: 169 TSASQSPGLRTSLFTPPVLSSFINQATAEDEEVAHRPPDDVKGSARPPKVVVVA 8
           T+ + SP + TSL + PV+++ +  A  E   +A  P +    ++ P    + A
Sbjct: 149 TTLTASPVVTTSLASAPVVTTSLASAPVETTSLASTPVETTSLASTPVDTTLTA 202


>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
          Length = 237

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 303 AAYPPPHNTNNRSSCKATPTYLSAYGMSGVGSVPTTGFGTQPSP 434
           A+ P P+   +      TP Y      S VG +P T   + PSP
Sbjct: 73  ASQPAPYTPASGQPASYTPAYTPYTPASTVGRMPPTTSQSTPSP 116


>SB_31443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 418 ALSPHHTHILHTMEDYRKPSLLHNKIIVI 504
           AL  +H    H    +RKP++LH  ++V+
Sbjct: 100 ALRVYHQIARHQPHSWRKPAILHAPVVVV 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,167,024
Number of Sequences: 59808
Number of extensions: 344280
Number of successful extensions: 1508
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)