Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311F11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   0.82 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.4  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +2

Query: 278 LWSLQPALRCISSTAQHEQQIVMQSDAYIPQCVRDEWSWKCAHHRIRHSALTIRIFF 448
           LWSL P +    STA    Q+ ++S    P   RD   W      +  + L +R+ F
Sbjct: 100 LWSLVPHMAWQLSTAHLLAQLFLKSTEVTP---RDGLGWLLLMLYLLFATLPLRLSF 153


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 424 SPHHTHILHTMEDYRKPSLLHN 489
           SPHH H  HTM     P   H+
Sbjct: 333 SPHHQHGNHTMGPTMGPPHHHH 354


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 187 VSPYSATSASQSPGLRTSLFTPPVLSSFINQATAEDEEVAHR 62
           + P  A S S S    + + TP     ++   + E EE+ HR
Sbjct: 302 IEPAEAESLSTSGS--SGILTPVSPYGYVKPISPEQEELIHR 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,610
Number of Sequences: 438
Number of extensions: 3242
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)