Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311F11f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1 (PL...    27   0.033
At4g15080.1 68417.m02317 zinc finger (DHHC type) family protein ...    31   0.62 
At2g25970.1 68415.m03117 KH domain-containing protein                  31   0.62 
At5g04170.1 68418.m00405 calcium-binding EF hand family protein ...    30   1.1  
At3g58870.1 68416.m06561 expressed protein predicted protein, Ar...    29   1.4  
At1g78310.1 68414.m09126 VQ motif-containing protein contains PF...    29   1.9  
At3g18035.1 68416.m02292 histone H1/H5 family protein contains P...    29   2.5  
At1g59960.1 68414.m06754 aldo/keto reductase, putative similar t...    28   4.4  
At5g44290.1 68418.m05421 protein kinase family protein contains ...    27   5.8  
At3g16310.1 68416.m02059 mitotic phosphoprotein N' end (MPPN) fa...    27   5.8  
At1g21380.1 68414.m02675 VHS domain-containing protein / GAT dom...    27   7.7  

>At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1
           (PLDBETA1) identical to SP|P93733 Phospholipase D beta 1
           (EC 3.1.4.4) (AtPLDbeta1) (PLD beta 1) (PLDbeta)
           {Arabidopsis thaliana}; contains Pfam profiles: PF00614
           phospholipase D.active site motif, PF00168 C2 domain
          Length = 1083

 Score = 27.5 bits (58), Expect(2) = 0.033
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
 Frame = +3

Query: 297 PYAAYPPPHNTNNRSSCKATPTYLSAYGMSGVGSVPTT----GFGTQPSPYAY 443
           PYA+ PPPH  +   S      Y      S + + P       F  QPSPY Y
Sbjct: 58  PYASPPPPHQ-HTSGSHSGPLDYSHNPQPSSLAAAPPEYHRHSFDYQPSPYPY 109



 Score = 26.2 bits (55), Expect(2) = 0.033
 Identities = 13/48 (27%), Positives = 15/48 (31%)
 Frame = +3

Query: 177 YGETLPYDQTALPYQYYNXXXXXXXXXXXXXXXXXGLYNQPYAAYPPP 320
           +G   PY     PY Y                     Y+ PY  YPPP
Sbjct: 4   HGPRYPYPYGQYPYPYPYPAPYRPPSSEPYPPPPTNQYSAPYYPYPPP 51


>At4g15080.1 68417.m02317 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 718

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 19/62 (30%), Positives = 24/62 (38%)
 Frame = -2

Query: 211 SAVWSYGSVSPYSATSASQSPGLRTSLFTPPVLSSFINQATAEDEEVAHRPPDDVKGSAR 32
           S VW   +    S  + +  P  R S    P+ SS +   T     V H P D   G A 
Sbjct: 584 SVVWDQEAGRYISVPATTSEPRTRFSSQNQPIPSSHMGN-TQNPRPVGHPPQDSSSGRAP 642

Query: 31  PP 26
           PP
Sbjct: 643 PP 644


>At2g25970.1 68415.m03117 KH domain-containing protein 
          Length = 632

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
 Frame = +3

Query: 288 YNQPYAAYPPPHNTNNRSSCKATPTYLSAYG-MSGVGSVPTTGFGTQP------SPYAYS 446
           YN  Y A PP          + +P    +YG  SG      +G+G  P      +P  Y 
Sbjct: 524 YNSGYGAPPPASKPPTYGQSQQSPGAPGSYGSQSGYAQPAASGYGQPPAYGYGQAPQGYG 583

Query: 447 SYNG 458
           SY G
Sbjct: 584 SYGG 587


>At5g04170.1 68418.m00405 calcium-binding EF hand family protein low
           similarity to peflin [Homo sapiens] GI:6015440; contains
           INTERPRO:IPR002048 calcium-binding EF-hand domain
          Length = 354

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
 Frame = +3

Query: 291 NQPYAAYPPPHNTNNRSSCKATPTY-LSAYGMSGVGSVPTTGFGTQPSPYAYSSYNGGLS 467
           + PYA   P   +  +SS  + PTY  S+YG     +      G    P     Y GG  
Sbjct: 43  SSPYAV--PYGASKPQSSSSSAPTYGSSSYGAPPPSAPYAPSPGDYNKPPKEKPYGGGYG 100

Query: 468 QTFTPTQQDYSNYAAG 515
                   DY +Y AG
Sbjct: 101 APPPSGSSDYGSYGAG 116


>At3g58870.1 68416.m06561 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 163

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +3

Query: 312 PPPHNTNNRSSCK-ATPTYLSAYGMSGVGSVPT--TGFGTQPSPY 437
           PP H TN  S  K ATPT    + + GVGS+P+  T +G  P  Y
Sbjct: 73  PPTHQTNYNSPGKLATPT----HRIDGVGSIPSIPTHWGLTPFFY 113


>At1g78310.1 68414.m09126 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 311

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 306 AYPPPHNTNNRSSCKAT-PTYLSAYGMSGVGSVPTTGFGTQPSPYAYSSYNGGLSQTFTP 482
           ++PPPH     S+   T PT + A  + G  S P + +G        S  +G L    +P
Sbjct: 239 SFPPPHPPPPSSAVSQTVPTSIPAPPLFGCSSSPKSPYGLLSPSILLSPSSGQLGFPVSP 298

Query: 483 T 485
           T
Sbjct: 299 T 299


>At3g18035.1 68416.m02292 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family;similar
           to HMG I/Y like protein (GI:15706274) [Glycine
           max];similar to HMR1 protein (GI:4218141) [Antirrhinum
           majus]; similar to high mobility group protein
           (GI:1483173) [Canavalia gladiata]
          Length = 480

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = -2

Query: 208 AVWSYGSVSPYSATSASQSPGLRTSLFTPPVLSSFINQATAEDEEVAHRPPDDVKGSARP 29
           +V S  SV PY A  A +  G    +  P   SS ++ A    E VA   P   +G  RP
Sbjct: 282 SVSSTASVYPYVANGARRR-GRPRRVVDP---SSIVSVAPVGGENVAAVAPGMKRGRGRP 337

Query: 28  PKV 20
           PK+
Sbjct: 338 PKI 340


>At1g59960.1 68414.m06754 aldo/keto reductase, putative similar to
           NADPH-dependent codeinone reductase GI:6478210 [Papaver
           somniferum], NAD(P)H dependent 6'-deoxychalcone synthase
           [Glycine max][GI:18728]
          Length = 326

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +3

Query: 342 SCKATPTYLSAYGMSGVGSVPTTGFGTQPSP 434
           S    PT     G SG  S+P  GFGT  SP
Sbjct: 2   SLTTVPTLAIRSGPSGHHSMPVLGFGTAASP 32


>At5g44290.1 68418.m05421 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 644

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 91  TAEDEEVAHRPPDDVKGSARPPKVVVVAHP 2
           T EDE+  H PP+++K   R P VV+   P
Sbjct: 75  TDEDEDDDHHPPEELK---REPSVVIPPSP 101


>At3g16310.1 68416.m02059 mitotic phosphoprotein N' end (MPPN)
           family protein contains Pfam profile PF05172: MPPN
           (Mitotic PhosphoProtein N' end) (rrm-like) domain
          Length = 329

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = +3

Query: 285 LYNQPYAAYPPPHNTNNRSSCKATPTYLSAYGMSGVGSVPTTGFGTQPSPYAYSSY 452
           L NQ +   PPP +T N +   + P YL     S     P+ G    PS    S +
Sbjct: 269 LNNQGFMPLPPPSSTRNTARPLSRPQYLQ--NGSAFSPQPSGGAMASPSKSMVSKF 322


>At1g21380.1 68414.m02675 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to Hrs [Rattus
           norvegicus] GI:8547026; contains Pfam profiles PF00790:
           VHS domain, PF03127: GAT domain
          Length = 506

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 130 FTPPVLSSFINQATAEDEEVA 68
           FTPP     + QATA DE+ A
Sbjct: 151 FTPPQTQPIVAQATASDEDAA 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,833,113
Number of Sequences: 28952
Number of extensions: 230651
Number of successful extensions: 846
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)