Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311F08f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 138 2e-33
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 138 3e-33
SB_56| Best HMM Match : Actin (HMM E-Value=0) 138 3e-33
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 138 3e-33
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 138 3e-33
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 136 8e-33
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 120 5e-28
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 49 2e-06
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 40 0.001
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_50207| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0) 28 4.1
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 28 5.4
SB_20112| Best HMM Match : EGF (HMM E-Value=0) 27 7.1
SB_41148| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_39925| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_12780| Best HMM Match : SAC3_GANP (HMM E-Value=3.7e-07) 27 9.4
SB_35821| Best HMM Match : TUDOR (HMM E-Value=0) 27 9.4
SB_27191| Best HMM Match : Lysis_S (HMM E-Value=5.6) 27 9.4
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 138 bits (335), Expect = 2e-33
Identities = 64/66 (96%), Positives = 66/66 (100%)
Frame = -1
Query: 521 ADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 342
ADRMQKEI+ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP+I
Sbjct: 284 ADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAI 343
Query: 341 VHRKCF 324
VHRKCF
Sbjct: 344 VHRKCF 349
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 138 bits (334), Expect = 3e-33
Identities = 64/66 (96%), Positives = 65/66 (98%)
Frame = -1
Query: 521 ADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 342
ADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI
Sbjct: 311 ADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 370
Query: 341 VHRKCF 324
VHRKCF
Sbjct: 371 VHRKCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 138 bits (334), Expect = 3e-33
Identities = 64/66 (96%), Positives = 65/66 (98%)
Frame = -1
Query: 521 ADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 342
ADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI
Sbjct: 310 ADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 369
Query: 341 VHRKCF 324
VHRKCF
Sbjct: 370 VHRKCF 375
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 138 bits (333), Expect = 3e-33
Identities = 64/66 (96%), Positives = 65/66 (98%)
Frame = -1
Query: 521 ADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 342
ADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI
Sbjct: 310 ADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 369
Query: 341 VHRKCF 324
VHRKCF
Sbjct: 370 VHRKCF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 138 bits (333), Expect = 3e-33
Identities = 64/66 (96%), Positives = 65/66 (98%)
Frame = -1
Query: 521 ADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 342
ADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI
Sbjct: 311 ADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 370
Query: 341 VHRKCF 324
VHRKCF
Sbjct: 371 VHRKCF 376
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 136 bits (330), Expect = 8e-33
Identities = 63/66 (95%), Positives = 65/66 (98%)
Frame = -1
Query: 521 ADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 342
ADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP+I
Sbjct: 273 ADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAI 332
Query: 341 VHRKCF 324
VHRKCF
Sbjct: 333 VHRKCF 338
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 120 bits (290), Expect = 5e-28
Identities = 54/66 (81%), Positives = 60/66 (90%)
Frame = -1
Query: 521 ADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 342
ADRMQKEI LA ++MK+K+IAPPERKYSVWIGGSILASLSTFQQMWI+K+EY E GP I
Sbjct: 84 ADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAKEEYHEYGPPI 143
Query: 341 VHRKCF 324
VHRKCF
Sbjct: 144 VHRKCF 149
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = -1
Query: 491 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*THR 312
+ P ++ ++I+ ++Y+VW GGS+LAS F + +K +YDE GPSI F HR
Sbjct: 285 IKPKPIETQVISHHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF-LHR 343
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 41.5 bits (93), Expect = 4e-04
Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = -1
Query: 473 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 351
KI+I PP RK+ V++GG++LA + W++++EY+E G
Sbjct: 358 KIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/42 (40%), Positives = 31/42 (73%), Gaps = 3/42 (7%)
Frame = -1
Query: 518 DRMQKEITALAPSTMKIKIIA---PPERKYSVWIGGSILASL 402
+R+ +E+ + P +M++K+I+ E++++ WIGGSILASL
Sbjct: 189 ERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILASL 230
>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 442 STPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSAS 323
STP +V PP PSN+ + +K S +P T S S
Sbjct: 217 STPQATVQTPPPPPEPSNEPSTSSKPKASPSPSSITTSTS 256
>SB_50207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = -2
Query: 400 LPSNKCGSRNKSTTSLAPPLYTGSASKRTARRCLQQP 290
L C SR K P Y G RT ++C +P
Sbjct: 118 LVKRTCNSRKKKKPEKRPSSYNGDTDYRTRKQCRYEP 154
>SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)
Length = 1066
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 397 PSNKCGSRNKSTTSLAPPLYTGSASK--RTARRCLQQPAAGC 278
P N+ G++ + +L P++TGS + RT + P+A C
Sbjct: 879 PGNQAGNKTRPLRALRSPIHTGSTLEVDRTRQGTRPDPSARC 920
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 424 VDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSA-SKRTA 311
VD+S P SLP+ K G + S P GS+ SK TA
Sbjct: 1939 VDKSEPGSLPTVKFGVTTTADASSMPKFQFGSSGSKDTA 1977
>SB_20112| Best HMM Match : EGF (HMM E-Value=0)
Length = 2112
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Frame = -2
Query: 415 SSPPSLPSNKCGSRNKSTTSLAPPLYTGSASKRTARRCLQQP---AAGCSIQACNLR*FN 245
SS P C R S + P YTGS + RC P A C +L F+
Sbjct: 684 SSDPCQHGGTCSDRIGSYSCYCRPGYTGSNCQHPLDRCANDPCRNGATCRRTGEDLSDFH 743
Query: 244 C 242
C
Sbjct: 744 C 744
>SB_41148| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 370 KSTTSLAPPLYTGSASKRTARRCLQQP 290
K+T P++T S K+T R C++ P
Sbjct: 18 KNTLRFIMPVFTRSGRKKTNRTCIEDP 44
>SB_39925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 430 GSVDRSSPPSLPSNKCGSRNKSTTSLAP 347
G+ S+P ++P + + N STTSL+P
Sbjct: 16 GTTRPSAPATIPHSTTNTDNSSTTSLSP 43
>SB_12780| Best HMM Match : SAC3_GANP (HMM E-Value=3.7e-07)
Length = 436
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 430 GSVDRSSPPSLPSNKCGSRNKSTTSLAP 347
G+ S+P ++P + + N STTSL+P
Sbjct: 124 GTTRPSAPATIPHSTTNTDNSSTTSLSP 151
>SB_35821| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 754
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 442 STPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTG 332
S YG +S+P S+ +NK R + PPL +G
Sbjct: 571 SAGYGKEAKSAPVSIAANKPFIRPSQDQQVMPPLISG 607
>SB_27191| Best HMM Match : Lysis_S (HMM E-Value=5.6)
Length = 181
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 467 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 336
K++ + KY + I G+ L+ F ISK EY P+I +
Sbjct: 50 KVVVIVDYKYELDIRGTKFGELTGFDPKVISKTEYGSKLPNITN 93
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,324,626
Number of Sequences: 59808
Number of extensions: 263165
Number of successful extensions: 828
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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