Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311F03f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0) 157 4e-42
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 31 0.58
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 29 1.8
SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11) 29 3.1
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006) 28 4.1
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 4.1
SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3) 28 5.4
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15) 27 7.1
SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_4809| Best HMM Match : SRF-TF (HMM E-Value=5.5) 27 7.1
SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3) 27 7.1
SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_7447| Best HMM Match : CHGN (HMM E-Value=0) 27 9.4
SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6) 27 9.4
SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
Length = 157
Score = 157 bits (380), Expect(2) = 4e-42
Identities = 76/114 (66%), Positives = 94/114 (82%)
Frame = +2
Query: 2 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVP 181
S KI+K G A+ FE ISQA++ELE NSD+KAQLRELYI+ AKEI++ KK+III+VP
Sbjct: 8 SAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVP 67
Query: 182 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 343
+P+++AFQKIQ RLVRELEKKFSGKHVV V R+ILP+P+ K+R KQKRPRS
Sbjct: 68 VPQIRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120
Score = 32.3 bits (70), Expect(2) = 4e-42
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +2
Query: 455 HLDKNQQTTIEHKVDT 502
HLDK QQTTI+HK++T
Sbjct: 121 HLDKTQQTTIDHKLET 136
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 31.1 bits (67), Expect = 0.58
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Frame = +2
Query: 86 NSDLKAQLRELYITKAKEIE---LHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFS-- 250
+ + K L+E+ I ++K+ E + + KS PKLKA Q + + KK
Sbjct: 261 HEEKKEDLKEVVIKQSKQDEATAIKDSKSESKPASKPKLKAVQNDAPKKANKPAKKAKKP 320
Query: 251 ---GKHVVFVGDRKILPKPSHKTRVANKQKRPRS 343
K V+ LP+ +H+ AN Q+RP++
Sbjct: 321 VKRAKKVLNKKKMDTLPRGAHRPASANAQRRPQN 354
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 29.5 bits (63), Expect = 1.8
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Frame = +2
Query: 11 IIKASGAEADSFETSISQALVELETNSDLKAQLRE----LYITKAKEIELHNKKSIIIYV 178
++++SG +S E+ + E N+ LK +L E L +T+ +E E+ N K + +YV
Sbjct: 1681 VLESSGGTMNSEESFFLE-----EDNAILKRKLDEKETALKVTQDREREM-NDKLMALYV 1734
Query: 179 PMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILP-KPSHKTRVANKQ 328
M KL++ Q ELEK+ ++ ++I P K S T VA +
Sbjct: 1735 NMSKLESTQGTLEEKNAELEKE------LYSAQQEIQPLKDSFNTAVAENE 1779
>SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)
Length = 237
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 325 FVSNTSFVAGLRQDLTVSNKDYMFTTE 245
F+ N SFV+ + DLT S+ D+ + TE
Sbjct: 40 FIPNLSFVSAVLWDLTKSSSDFQWHTE 66
>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
Length = 1552
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 38 DSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPM-PKLKAFQ 205
+ ++T ++ L + L+ +RELY +E E KKS++ ++ + PK+K +
Sbjct: 171 EQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKSMVQHILVKPKVKGVE 227
>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 1831
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 90 PTSKPNFGSFTLQKLKKLNYTIRS 161
P S N+G FT+++LK +YT +S
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438
>SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)
Length = 513
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -2
Query: 295 LRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHIDDDRLL 155
LRQ L SN +L L K D+ K +H+ DD LL
Sbjct: 170 LRQRLNSSNPSISSPINILDALCQKHDIAYSKSKDLDDKHVADDNLL 216
>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
Length = 417
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Frame = +3
Query: 69 WSNSKPTPTSKPN--------FG-SFTLQKLKKLNYTIRSRS 167
WS+ KPTP KPN FG T Q L+K N+ + RS
Sbjct: 125 WSDPKPTPGCKPNTFRGGGCYFGPDVTSQVLRKHNFELLVRS 166
>SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 932
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 480 VVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSR 373
V+CW L + + + EP N L +L ++ GK K S+
Sbjct: 339 VICWVLGEYSYIVSEP-NTVLEQLHSLLDGKLKDSK 373
>SB_4809| Best HMM Match : SRF-TF (HMM E-Value=5.5)
Length = 311
Score = 27.5 bits (58), Expect = 7.1
Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Frame = +2
Query: 86 NSDLKAQLREL-YITKAKEIELHNKKSIIIYVP--MPKLKAFQKIQIRLVRELEKKFSGK 256
N K +R + YI K E+ K+ +++ M +++ + +L+ + +
Sbjct: 51 NKAKKGVIRTVGYINKGNEVISTKKRKLLMKHSRDMLEVQVISTKKRKLLMKHSRDMLEV 110
Query: 257 HVVFVGDRKILPKPSH---KTRVANKQKRPRSRTLTSVYDAILE-DLVFPAEIVGKRIRV 424
V+F+ +RK+L K SH K +V +KR + LT +LE ++F E +++
Sbjct: 111 QVIFIKERKLLTKHSHDLVKVQVIFTKKR---KLLTKHSRDLLEVQVIFTKE---RKLLT 164
Query: 425 KLDGSQL-IKVHLDKNQQTTIEHKVDTLPV 511
K L ++V + ++ +H D L V
Sbjct: 165 KHSHDLLEVQVIFTREKKLLTKHSRDLLEV 194
>SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)
Length = 151
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/26 (42%), Positives = 21/26 (80%)
Frame = +2
Query: 176 VPMPKLKAFQKIQIRLVRELEKKFSG 253
VP+P++ A QK++ +L R++E+K +G
Sbjct: 69 VPLPQVSAMQKVKGKL-RDMEQKLNG 93
>SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 380
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/101 (19%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Frame = +2
Query: 29 AEADSFETSISQALVELETNSDLKAQLRELYITKAKEI-----ELHNKKSIIIYVPMPKL 193
A+ + + Q E++T+ + K +RE ITK K + E +++++ + K+
Sbjct: 237 AQRKTLSDAAKQCSTEIKTSENKKMTIREDMITKRKHVRDRRREHREEETVLRKDELDKV 296
Query: 194 KAFQKIQIRLVRELEKKF---SGKHVVFVGDRKILPKPSHK 307
+ + + +RE+E++F K+ + +R++ + K
Sbjct: 297 AKLYEEEKQDLREMEQEFQNMEAKYNAILEERRLAAEAEKK 337
>SB_7447| Best HMM Match : CHGN (HMM E-Value=0)
Length = 918
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +2
Query: 323 KQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTI 484
K+KRP ++DAI F G + KLD L + D +++ T+
Sbjct: 799 KRKRPSIEKFAIIFDAITTKARFARYKNGSSKKHKLDKRPLFAMDSDSDEELTV 852
>SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
Length = 493
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -2
Query: 295 LRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHIDDDRLL 155
LRQ L SN +L L K D+ K +H+ DD LL
Sbjct: 40 LRQRLNSSNPGISNPINILDALCQKHDIAYSKSKDLDDKHVADDNLL 86
>SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 275 DRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILED 382
D I+P P H+T N +K L S+ D +D
Sbjct: 434 DELIIPPPRHRTETHNDEKFNVEERLRSLLDVAADD 469
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,416,016
Number of Sequences: 59808
Number of extensions: 304176
Number of successful extensions: 839
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -