Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311F03f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 166 9e-42
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 166 9e-42
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 164 3e-41
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 155 2e-38
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 155 2e-38
At5g37140.1 68418.m04458 tRNA-splicing endonuclease positive eff... 33 0.088
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 30 0.82
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 30 0.82
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 29 1.9
At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive eff... 28 4.4
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 28 4.4
At5g40640.1 68418.m04933 expressed protein 27 7.7
At4g08113.1 68417.m01331 myosin heavy chain-related similar to M... 27 7.7
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 27 7.7
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 166 bits (403), Expect = 9e-42
Identities = 83/168 (49%), Positives = 123/168 (73%), Gaps = 2/168 (1%)
Frame = +2
Query: 8 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 181
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 182 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 361
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 362 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTL 505
++A+LED+ +PAEIVGKR R +LDG++++KV LD + E+K++T+
Sbjct: 123 HEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETM 170
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 166 bits (403), Expect = 9e-42
Identities = 83/168 (49%), Positives = 123/168 (73%), Gaps = 2/168 (1%)
Frame = +2
Query: 8 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 181
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 182 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 361
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 362 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTL 505
++A+LED+ +PAEIVGKR R +LDG++++KV LD + E+K++T+
Sbjct: 123 HEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETM 170
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 164 bits (399), Expect = 3e-41
Identities = 85/168 (50%), Positives = 121/168 (72%), Gaps = 2/168 (1%)
Frame = +2
Query: 8 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 181
KI K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 182 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 361
KAF+KI RLVRELEKKFSGK V+FV R+I+ P V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSV 122
Query: 362 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTL 505
++A+LED+ FPAEIVGKR R +LDGS+++KV LD ++ E+K++T+
Sbjct: 123 HEAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETM 170
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 155 bits (376), Expect = 2e-38
Identities = 78/166 (46%), Positives = 118/166 (71%), Gaps = 2/166 (1%)
Frame = +2
Query: 8 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 181
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 182 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 361
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSV 122
Query: 362 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVD 499
++AIL+D+V PAEIVGKR R +LDG++++KV LD ++ E+KV+
Sbjct: 123 HEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVE 168
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 155 bits (376), Expect = 2e-38
Identities = 78/166 (46%), Positives = 118/166 (71%), Gaps = 2/166 (1%)
Frame = +2
Query: 8 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 181
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 182 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 361
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSV 122
Query: 362 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVD 499
++AIL+D+V PAEIVGKR R +LDG++++KV LD ++ E+KV+
Sbjct: 123 HEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVE 168
>At5g37140.1 68418.m04458 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 692
Score = 33.5 bits (73), Expect = 0.088
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -3
Query: 510 TGRVSTLCSIVVCWFLSKCTLMSCEPSNLTLMRLPT--ISAGKTKSSRIASYTEVNVLER 337
TG+ T+ +++ C C + C P+N ++ + + +S KT SS ++Y N++
Sbjct: 106 TGKTKTVATLLFCLLKLSCKTVVCAPTNTAIVEVTSRLLSLFKTSSSEHSTYGLGNIVLS 165
Query: 336 G 334
G
Sbjct: 166 G 166
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 30.3 bits (65), Expect = 0.82
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 322 QTKEATLKDIDLCVRCYPRGLG 387
Q +E++LK CVRCYP G G
Sbjct: 179 QRRESSLKYQTRCVRCYPNGTG 200
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 30.3 bits (65), Expect = 0.82
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 322 QTKEATLKDIDLCVRCYPRGLG 387
Q +E++LK CVRCYP G G
Sbjct: 178 QRRESSLKYQTRCVRCYPNGTG 199
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 29.1 bits (62), Expect = 1.9
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -3
Query: 441 CEPSNLTLMRLPTISAGKTKSSRIASYTEVNVLE 340
C+ SN+T +R+P + G S +A ++ + V++
Sbjct: 66 CDSSNITEIRIPGMKVGGGLSDTLADFSSIQVMD 99
>At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 871
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/57 (21%), Positives = 28/57 (49%)
Frame = -3
Query: 510 TGRVSTLCSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSRIASYTEVNVLE 340
TG+ T+ +++ KC + C P+N T++ + + +K + + + T + E
Sbjct: 276 TGKTKTVATLLSTLMQLKCKTVVCAPTNTTIVAVASRLLSLSKETIVCAPTNSAIAE 332
>At1g52960.1 68414.m05990 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 27.9 bits (59), Expect = 4.4
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +2
Query: 143 ELHNKKSIIIY--VPMPKLKAFQKIQIRLVREL-----EKKFSGKHVVFVGD-RKILP 292
EL + ++II+ PM F+ + R +R++ +K F GK +VF GD R++LP
Sbjct: 640 ELVKEANLIIWDETPMMSKHCFESLD-RTLRDIMNNPGDKPFGGKGIVFGGDFRQVLP 696
>At5g40640.1 68418.m04933 expressed protein
Length = 586
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +2
Query: 200 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYD 367
F++ + LV++L KH F G + +P+P QK + +T ++ D
Sbjct: 517 FRRHFVELVKKLSNDLDNKHNRFEGGSRSVPRPGKTVSRIFSQKSFKKKTSSNGSD 572
>At4g08113.1 68417.m01331 myosin heavy chain-related similar to
Myosin heavy chain, skeletal muscle, extraocular
(MyHC-eo) (SP:Q9UKX3) {Homo sapiens}
Length = 764
Score = 27.1 bits (57), Expect = 7.7
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Frame = +2
Query: 5 TKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEI---ELHNKKSIIIY 175
T +KA SF+ I + +EL T+ DL+ E EI EL K +
Sbjct: 554 TSSVKAGQDRKVSFQAEIERLKMELSTSKDLEKGFAEKIGFMEMEIRGEELSKKVVDLTS 613
Query: 176 VPMPKLKAFQKIQIRLVRELEKKFSG 253
V + KA ++ L K +G
Sbjct: 614 VAQGEKKAVHDAKVELAAAYSKLLAG 639
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 75 NSKPTPTSKPNFGSF 119
NSKP PTS+ NFG F
Sbjct: 337 NSKPGPTSERNFGLF 351
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,870,972
Number of Sequences: 28952
Number of extensions: 215513
Number of successful extensions: 657
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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