Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311E10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.7  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   7.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   7.7  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 11  HFHDIFFPNRNIPLY 55
           HFH+I  PN  I ++
Sbjct: 129 HFHNIIMPNVYIRIF 143


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 11  HFHDIFFPNRNIPLY 55
           HFH+I  PN  I ++
Sbjct: 129 HFHNIIMPNVYIRIF 143


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 261 SRYKVVYADLINILKLLVP 205
           + YK +Y ++INI ++ VP
Sbjct: 329 NNYKPLYYNIINIEQIPVP 347


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 261 SRYKVVYADLINILKLLVP 205
           + YK +Y ++INI ++ VP
Sbjct: 347 NNYKKLYYNIINIEQIPVP 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,389
Number of Sequences: 438
Number of extensions: 2068
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)