Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311E08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    29   0.56 
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   1.7  
SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces p...    26   3.0  
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    26   3.9  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    26   3.9  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   5.2  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    25   6.8  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   6.8  
SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe...    25   9.0  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   9.0  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    25   9.0  
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme...    25   9.0  

>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = +1

Query: 115  YYPEYKYTSILRSDPTWQEESQSSGED-----QWQSETVYKSRSYDKHKGACEVRQQVQF 279
            Y  E  + +++  +  W+E S+   E      +WQS    +++  +K + +   +Q+ Q 
Sbjct: 1105 YLAEIVFKTLVEKEREWRENSEEWKEKMREYKKWQSTANQRAKQMEKFEKSATEKQKEQA 1164

Query: 280  YENHGDI 300
             +  GDI
Sbjct: 1165 LKEAGDI 1171


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -3

Query: 387 FTRHLNVLYFVVSSTAMRLTRGHSRSCDTDIAVVLIKLHLLPNFTSALVFVVASRL 220
           F R L V   + S T + +   H RS D+D+ ++ + LHLL       + ++++ L
Sbjct: 739 FLRLLEVGNEIESVTHLIIDEVHERSIDSDLLLIHV-LHLLKQHPHLKIIIMSATL 793


>SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 208

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = +2

Query: 101 QHNKLTTQNISTQASYALTQLGKKNHSPPVRINGSLKPSISLEATTNTRALVKLGNRCSF 280
           Q   + +  IS   S ++ QL K   S  +  + SLKPS+SL+   ++  L    +   F
Sbjct: 113 QQEVIESTVISKSQSPSVKQL-KLTESTLLAPSSSLKPSVSLKKDISSNLLCAAASNGYF 171

Query: 281 MRTTAISVSQL 313
            R  A+    L
Sbjct: 172 RRPAAMRAQTL 182


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 471 DARYSRYLGVLALFDLFFVHAEVVVEFRFTRHLNVLYFV 355
           D R+ RYL V ALF       EV  + R  +  N  YFV
Sbjct: 304 DPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFV 342


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = +1

Query: 22  KPELYAAAYSLNEENSDPKTQELKALATQQAYYPEYKYTSILRSDPTWQEESQSSGED 195
           KP     A     ENSDPK+ E + L  +   +   K       +   QE+++   ED
Sbjct: 131 KPTSSDTASVKETENSDPKSAENEVLEGETTQHSNNKEAHPNTEENKEQEDNEEDDED 188


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 406 SRGRVSIYTSLERAVFCSLQHG 341
           S+ R+S  TSL  A FC ++HG
Sbjct: 361 SQRRMSSITSLPTASFCPVKHG 382


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 118 YPEYKYTSILRSDPTWQEESQSSGEDQWQ 204
           YP+Y     ++ D T  EE  SSGE  W+
Sbjct: 307 YPDYA----VKQDETVVEEDGSSGEGDWE 331


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 110 KLTTQNISTQASYALTQLGKKNH 178
           K+  QN+S+Q S   +QL + NH
Sbjct: 757 KIEVQNVSSQLSICNSQLEQSNH 779


>SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +1

Query: 358 KIQHVQVTCKSKLDHDFRMYKEQIKKGQNPEVSGIPSVKQFKV 486
           KIQ  +++ K+ L+H+  +Y+ ++ +    +V G+P  +  KV
Sbjct: 60  KIQQFELSDKAVLNHNTAIYRFRLPRAN--DVLGLPIGQHLKV 100


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +1

Query: 55  NEENSDPKTQELKALATQQAYYPEYKYTSILRSDPTWQEESQSSGEDQWQSETVYKSRSY 234
           NEEN++ +T E   + +    +P+  +  +L  D   ++ SQ   ED       YKS S 
Sbjct: 62  NEENNEIETNEEMHVNSHDYAFPQEFFLKLLDIDMPLEQLSQHYFED-------YKSNSA 114

Query: 235 D 237
           D
Sbjct: 115 D 115


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 179 SPPVRINGSLKPSISLEATTNT 244
           SPP  I+G    S+ L  TTNT
Sbjct: 461 SPPCNISGIKPGSLKLSPTTNT 482


>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
           Spe2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
 Frame = +1

Query: 46  YSLNEENSDPKTQELKALATQ-------QAYYPEYKYTSILRSDPTWQEESQSSG 189
           YSL E++ DP+ + L+ L T        Q Y P        R D   +E++  SG
Sbjct: 183 YSLLEDSLDPEDETLEVLMTDMSPERSLQFYAPSLDVVRSARGDDYVREKNNLSG 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.130    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,452
Number of Sequences: 5004
Number of extensions: 45382
Number of successful extensions: 142
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)