Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311E08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1202 + 10389090-10389140,10389218-10389853,10390355-103904...    29   2.3  
07_01_0449 - 3392512-3393504                                           28   5.2  
03_06_0313 + 33073542-33074464,33074901-33075069                       27   6.9  
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290...    27   9.1  

>06_01_1202 +
           10389090-10389140,10389218-10389853,10390355-10390439,
           10390536-10390654,10391251-10391318,10391401-10391710
          Length = 422

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 118 SKLVVLLEPSVPGFWGHCSPHLGCRLRHIAQACRPNL 8
           ++L V+L P + GF G C P+L     H     R  L
Sbjct: 132 TRLFVVLHPCIQGFLGGCRPYLAIDSTHFTGKYRGQL 168


>07_01_0449 - 3392512-3393504
          Length = 330

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 262 RQQVQFYENHGDICITTSRVPSCQSHC 342
           R  V FY + G  CI +   P+CQ++C
Sbjct: 68  RLPVFFYYHGGGFCIGSRTWPNCQNYC 94


>03_06_0313 + 33073542-33074464,33074901-33075069
          Length = 363

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 7/114 (6%)
 Frame = +2

Query: 128 ISTQASYALTQLGKKNHSPPV----RINGSLKPSISLEATTNTRA--LVKLGNRCSFMRT 289
           +S +  +A  +LGK+  SPPV     ++  L  + S  A +N R               T
Sbjct: 44  LSNRVGHARARLGKRRSSPPVDPGCLMDHPLAAAASSPAPSNGRLHFSSSAATASPSPAT 103

Query: 290 TAISVSQLRECPR-VSRIAVLETTKYSTFK*RVNRNSTTTSACTKNRSKRARTP 448
            A + S     P  V R   LETT            + + +A  KN SK A  P
Sbjct: 104 AAAASSAANVTPAVVDRSLFLETTLLDLNSRGAPAPAASMAAAAKNSSKLAPAP 157


>02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,
            2907650-2907790,2907870-2908043,2908577-2908851,
            2909592-2909755,2910409-2910536,2910628-2910734,
            2911747-2911880,2912266-2912441,2912530-2914257,
            2915084-2915239,2915328-2915486,2915581-2915751,
            2915931-2916047,2916417-2916473,2916565-2916680,
            2916790-2916916,2917862-2917945
          Length = 2056

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 151  SDPTWQEESQSSGEDQWQSETVYKSRSYD 237
            SD  W     S G+D W S    +SR+ D
Sbjct: 1792 SDSAWNAAPVSQGDDVWNSAEANESRNKD 1820


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.130    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,828,142
Number of Sequences: 37544
Number of extensions: 309247
Number of successful extensions: 836
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)