Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311E08f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0)                32   0.33 
SB_44756| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_44890| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_47804| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)                 29   3.1  
SB_16774| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_56056| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)                27   7.1  
SB_5402| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_9194| Best HMM Match : SWIM (HMM E-Value=0.01)                      27   9.4  
SB_7728| Best HMM Match : GBP_C (HMM E-Value=0.19)                     27   9.4  

>SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
          Length = 298

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = +1

Query: 184 SGEDQWQSETVYKSRSYDKHKGACEVRQQVQFYENHGDI--CITTSRVPSCQSHCRAGDY 357
           S  D W+S+ +     YD HKG    +     +   G +  C   S  P C+  C AG Y
Sbjct: 161 SAWDHWKSKGLVTGGQYDSHKGCQPYKIAACDHHVVGKLKPCKGDSPTPKCERKCEAG-Y 219

Query: 358 KIQH 369
            + +
Sbjct: 220 NVSY 223


>SB_44756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 2/134 (1%)
 Frame = +2

Query: 116 TTQNISTQASYALTQLGKKNHSPPVRINGSLK--PSISLEATTNTRALVKLGNRCSFMRT 289
           TT+N ST+A+   +    +N+S     N S K   + S +AT N +A      + +   +
Sbjct: 119 TTENYSTKAAEKYSTKATENYSTKATENYSTKATENYSTKATENYKATENYSTKATENYS 178

Query: 290 TAISVSQLRECPRVSRIAVLETTKYSTFK*RVNRNSTTTSACTKNRSKRARTPRYLEYLA 469
           T     +          +   T KYST K   N ++  T   +   +++  T     Y  
Sbjct: 179 T--KSKENNSTKATENYSTKATEKYST-KATENFSTKATENYSTKATEKYSTKASENYST 235

Query: 470 SSNSKYR*LASLKY 511
            +  KY   A+  Y
Sbjct: 236 KATEKYSTKAAENY 249



 Score = 28.7 bits (61), Expect = 3.1
 Identities = 28/137 (20%), Positives = 48/137 (35%)
 Frame = +2

Query: 101 QHNKLTTQNISTQASYALTQLGKKNHSPPVRINGSLKPSISLEATTNTRALVKLGNRCSF 280
           +++   T+N ST+A+   +    +N+S     N     + S +AT N     K  N    
Sbjct: 130 KYSTKATENYSTKATENYSTKATENYSTKATENYKATENYSTKATENYSTKSKENNSTKA 189

Query: 281 MRTTAISVSQLRECPRVSRIAVLETTKYSTFK*RVNRNSTTTSACTKNRSKRARTPRYLE 460
               +   ++          +   T  YST          + +  TK   K + T     
Sbjct: 190 TENYSTKATEKYSTKATENFSTKATENYSTKATEKYSTKASENYSTKATEKYS-TKAAEN 248

Query: 461 YLASSNSKYR*LASLKY 511
           Y   +  KY   A+ KY
Sbjct: 249 YSTKATEKYSTKATEKY 265


>SB_44890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +1

Query: 49  SLNEENSDPKTQELKALATQ-QAYYPEYKYTSILRSDPTWQEESQSSGEDQWQSETVYKS 225
           SL+    D    E+  L  + +A   EY+    +R      +   S+G     +E + ++
Sbjct: 118 SLDANEKDDLESEIGKLEDENRALQSEYERLKSMRDADHSSDGDLSTGSQSRDTELLTEA 177

Query: 226 RSYDKHKGACEVRQQV 273
           +   +HKG  E R QV
Sbjct: 178 KLLRQHKGRLEARMQV 193


>SB_47804| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)
          Length = 402

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = +1

Query: 121 PEYKYTSILRSDPTWQEESQSSGEDQWQSETVYKSRSYDKHKGACEVRQQVQFYENHGDI 300
           P  KYT   RS  T +E   S G D W++  +Y+ R   KH         VQ +E     
Sbjct: 74  PMKKYTP--RSVHTHEEIHPSIGTDPWRNTPLYQYRPMKKH-----TPLSVQTHEKIHPS 126

Query: 301 CITTS 315
           C++T+
Sbjct: 127 CLSTN 131


>SB_16774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/66 (22%), Positives = 27/66 (40%)
 Frame = +1

Query: 109 QAYYPEYKYTSILRSDPTWQEESQSSGEDQWQSETVYKSRSYDKHKGACEVRQQVQFYEN 288
           Q+ +P     +I+      +EE ++   D W      K  +  K K A   R  + F ++
Sbjct: 238 QSKFPFITICNIIFQRKLTEEERENKDADYWNDINAKKMTNVTKQKKALIYRADIMFAQH 297

Query: 289 HGDICI 306
             DI +
Sbjct: 298 DYDIIV 303


>SB_56056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 316 RVPSCQSHCRAGDYKIQHVQVTCKSKLDHDFRMYKEQIKKGQNPEVSG---IPSVKQFKV 486
           R P   S C+    +  +V V C SK +H+FR Y        NP V+    IP V + ++
Sbjct: 59  RDPEHTSRCQGAGAR--YVIVDC-SKFEHNFRTYYSNTSIHYNPYVTNTAFIPEVHKLRI 115


>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
          Length = 1495

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +1

Query: 163 WQEESQSSGEDQWQSETVYKSRSYDKH 243
           WQ++       QWQ +T Y+ +   +H
Sbjct: 230 WQQQPYQQQTQQWQQQTSYQQQQQQQH 256


>SB_5402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 316 RVPSCQSHCRAGDYKIQHVQVTCKSKLDHDFRMYKEQIKKGQNPEVSG---IPSVKQFKV 486
           R P   S C+    +  +V V C SK +H+FR Y        NP V+    IP V + ++
Sbjct: 59  RDPEHTSRCQGAGAR--YVIVDC-SKFEHNFRTYYSNTSIHYNPYVTNTAFIPEVHKLRI 115


>SB_9194| Best HMM Match : SWIM (HMM E-Value=0.01)
          Length = 701

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 274 QFYENHGDICITTSRVPSCQSHCRAGDYKIQHVQVTCKSKLDHDFRMYK 420
           +FY  + DI     R  + Q H +A    ++H+    K K   DF  Y+
Sbjct: 75  RFYPTNKDIANAILREKTRQCHSKADQENLEHLVRKWKEKSPDDFFHYR 123


>SB_7728| Best HMM Match : GBP_C (HMM E-Value=0.19)
          Length = 435

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +1

Query: 223 SRSYDKHKGACEVRQQVQFYENHGDICITTSRVP 324
           +R Y  +KG C  R+QV  YENH  I I +  VP
Sbjct: 81  TREYSHNKGFCIERKQV--YENH-SIGIISCTVP 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.130    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,216,208
Number of Sequences: 59808
Number of extensions: 373078
Number of successful extensions: 1324
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)