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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311E08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin st...    35   0.041
X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin pr...    34   0.054
U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin st...    34   0.071
U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin st...    33   0.12 
AC024137-1|AAK09074.1| 1603|Caenorhabditis elegans Vitellogenin ...    32   0.29 
AF106577-11|AAC78185.1|  322|Caenorhabditis elegans Hypothetical...    30   1.2  
U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase ...    29   1.5  
U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase ...    29   1.5  
AF077541-7|AAC64628.1|  197|Caenorhabditis elegans Hypothetical ...    29   1.5  
AF016669-3|AAB66097.1|  275|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z66560-3|CAA91451.2|  265|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF022979-10|AAB69905.3|  651|Caenorhabditis elegans Nematode ast...    28   3.5  
AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin ...    28   3.5  
Z82265-7|CAB05171.2|  425|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z92824-7|CAB07310.1|  156|Caenorhabditis elegans B0413.7 protein.      27   6.2  
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    27   6.2  
U64609-8|AAB04605.2|  465|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AC024881-9|AAK71410.1|  588|Caenorhabditis elegans Hypothetical ...    27   6.2  
AC006720-9|AAF60443.2|  480|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z79603-5|CAB01891.1|  435|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z47070-3|CAA87341.1|  528|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U13019-5|AAC24444.1|  994|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    27   8.1  
AF106589-1|AAC78228.2|  629|Caenorhabditis elegans Abnormal acet...    27   8.1  
AF025378-1|AAC14016.2|  629|Caenorhabditis elegans acetylcholine...    27   8.1  

>U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 2, isoform
            a protein.
          Length = 1613

 Score = 34.7 bits (76), Expect = 0.041
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
 Frame = +1

Query: 166  QEESQSSGED-QWQSETVYKSRSYDKHKGACEVRQQVQFYENHGDICITTSRVPSCQSHC 342
            Q +  SS E   ++ E   KS+   + +   ++ ++ Q  E    IC +   V  C+   
Sbjct: 1498 QSDEYSSEETYDYEQENTKKSQKNQRSQKKSDLVEKTQIKEFSHRICFSVEPVAECRRGY 1557

Query: 343  RAGDYKIQHVQVTCKSKLDHD-FRMYKEQIKKGQNPEVSGIPSVKQFKVPVTC 498
                 + + ++ TC  + + D  R+ KE  ++    +   +  V+  KVP  C
Sbjct: 1558 EVEQQQQRKIRFTCLQRHNRDASRLLKESRQQPLQLDDYPVSFVESVKVPTAC 1610


>X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin
            protein.
          Length = 1613

 Score = 34.3 bits (75), Expect = 0.054
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
 Frame = +1

Query: 166  QEESQSSGED-QWQSETVYKSRSYDKHKGACEVRQQVQFYENHGDICITTSRVPSCQSHC 342
            Q +  SS E   ++ E   KS+   + +   ++ ++ Q  E    IC +   V  C+   
Sbjct: 1498 QSDEYSSEETYDYEQENTKKSQKNQRSQKKSDLVEKTQIKEFSHRICFSVEPVAECRRGY 1557

Query: 343  RAGDYKIQHVQVTCKSKLDHD-FRMYKEQIKKGQNPEVSGIPSVKQFKVPVTC 498
                 + + ++ TC  + + D  R+ KE  ++    +   +  V+  KVP  C
Sbjct: 1558 EVEQQQQRKIRFTCWQRHNRDASRLLKESRQQPLQLDDYPVSFVESVKVPTAC 1610


>U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 2, isoform
            b protein.
          Length = 1558

 Score = 33.9 bits (74), Expect = 0.071
 Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 1/111 (0%)
 Frame = +1

Query: 169  EESQSSGEDQWQSETVYKSRSYDKHKGACEVRQQVQFYENHGDICITTSRVPSCQSHCRA 348
            +E  S     ++ E   KS+   + +   ++ ++ Q  E    IC +   V  C+     
Sbjct: 1445 DEYSSEETYDYEQENTKKSQKNQRSQKKSDLVEKTQIKEFSHRICFSVEPVAECRRGYEV 1504

Query: 349  GDYKIQHVQVTCKSKLDHD-FRMYKEQIKKGQNPEVSGIPSVKQFKVPVTC 498
               + + ++ TC  + + D  R+ KE  ++    +   +  V+  KVP  C
Sbjct: 1505 EQQQQRKIRFTCLQRHNRDASRLLKESRQQPLQLDDYPVSFVESVKVPTAC 1555


>U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 5 protein.
          Length = 1603

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 22/114 (19%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
 Frame = +1

Query: 163  WQEESQSSGEDQWQSETVYKSRSYDKHKGACEVRQQVQFYENHGDICITTSRVPSCQSHC 342
            W  E + S    ++S + Y+S +YD+ +   E+ ++    E    +C +   V  C+   
Sbjct: 1491 WNREEKKS---DYESSSDYES-NYDEKETEKELVKKTLIKEFSNRVCFSIEPVSECRRGL 1546

Query: 343  RAGDYKIQHVQVTCKSKLDHDFRMYKEQIKKGQNPEVSGIP--SVKQFKVPVTC 498
             +     + ++ TC  +   + R + ++ ++    E+   P   V+  K+P  C
Sbjct: 1547 ESEKTSNKKIRFTCMPRHSKNARRFLKEAREQTVAELVDFPVSFVESVKIPTAC 1600


>AC024137-1|AAK09074.1| 1603|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 4 protein.
          Length = 1603

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 21/114 (18%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
 Frame = +1

Query: 163  WQEESQSSGEDQWQSETVYKSRSYDKHKGACEVRQQVQFYENHGDICITTSRVPSCQSHC 342
            W  E + S    ++S + Y+S +YD+ +   E+ ++    E    +C +   V  C+   
Sbjct: 1491 WNREEKKS---DYESSSDYES-NYDEKETEKELVKKTLIKEFSNRVCFSIEPVSECRRGL 1546

Query: 343  RAGDYKIQHVQVTCKSKLDHDFRMYKEQIKKGQNPEVSGIP--SVKQFKVPVTC 498
             +     + ++ TC  +   + R + ++ ++    ++   P   V+  K+P  C
Sbjct: 1547 ESEKTSNKKIRFTCMPRHSKNARRFLKEAREQTVADLVDFPVSFVESVKIPTAC 1600


>AF106577-11|AAC78185.1|  322|Caenorhabditis elegans Hypothetical
           protein F46F5.5 protein.
          Length = 322

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +2

Query: 188 VRINGSLKPSISLEATTNTRALVKLGNR---CSFMRTTAISVSQLRECPRVSRIAV 346
           V + GS+K  + L    N  A+V LGN       ++   I+VS L+E   + R+ +
Sbjct: 260 VEMVGSIKEKVKLARNMNMTAIVPLGNLDEVPKMLKDEVITVSSLKEAVEIIRMRI 315


>U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase
           protein 25, isoformb protein.
          Length = 1130

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 288 PRRYLY-HNFESALVSVALP-CWRLQNTARSSDV*IETRPRLPHVQRTDQKGPEP 446
           P   LY  N  S+L S A+     + +TAR + V  ETRP  PHV    +K  EP
Sbjct: 826 PSALLYGSNSTSSLPSAAVSTASSVPSTARDNPV--ETRPSQPHVTMPPKKSSEP 878


>U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase
            protein 25, isoforma protein.
          Length = 1237

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 288  PRRYLY-HNFESALVSVALP-CWRLQNTARSSDV*IETRPRLPHVQRTDQKGPEP 446
            P   LY  N  S+L S A+     + +TAR + V  ETRP  PHV    +K  EP
Sbjct: 933  PSALLYGSNSTSSLPSAAVSTASSVPSTARDNPV--ETRPSQPHVTMPPKKSSEP 985


>AF077541-7|AAC64628.1|  197|Caenorhabditis elegans Hypothetical
           protein Y23H5A.2 protein.
          Length = 197

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +2

Query: 110 KLTTQNISTQASYALTQLGKKNHSPPVRINGSLKPSISLEATTNTRALVKLGNRCSF 280
           K++  N   +      ++  K+  PPVR+  S  P     +T+N R L+ L +R  F
Sbjct: 18  KISRPNQQMRLPIIRPKIPPKSSGPPVRLITSATPQPIAPSTSNPRPLISLLDRTEF 74


>AF016669-3|AAB66097.1|  275|Caenorhabditis elegans Hypothetical
           protein K10G6.2 protein.
          Length = 275

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 259 VRQQVQFYENHGDICITTSRVPSCQSHCRAGD 354
           +R+Q +F+E  G    T   + SC SHC+  D
Sbjct: 103 IRRQTKFWEGAGVPKATIQAMSSCYSHCKETD 134


>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
            H02I12.1 protein.
          Length = 1319

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +1

Query: 73   PKTQELKALATQ--QAYYPEYKYTSILRSDPTWQEESQSSGEDQWQSETVYKSRSYDKHK 246
            PK   +K   T   Q+ + + K   + R++       Q  G + ++  +   S ++++  
Sbjct: 1164 PKNPSIKKYYTSNDQSAFCDGKEDGLYRNERDCSAILQCFGGELFEHPSCQSSLAFNQLT 1223

Query: 247  GACEVRQQVQFYENHG 294
            G C+  Q+V   ENHG
Sbjct: 1224 GKCDYPQKVSGCENHG 1239


>Z66560-3|CAA91451.2|  265|Caenorhabditis elegans Hypothetical
           protein D1053.3 protein.
          Length = 265

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 164 GKKNHSPPVRINGSLKPSISLEATTNTRALVK-LGNRCSFMRTTAISVSQLRE 319
           G K H    +I   L  +IS         L + LG+RCSFM+ ++ S S  ++
Sbjct: 145 GMKRHYSMEQIRKGLDDNISTSVADQGEQLAQELGSRCSFMQISSSSSSDAKK 197


>AF022979-10|AAB69905.3|  651|Caenorhabditis elegans Nematode
           astacin protease protein32 protein.
          Length = 651

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = +1

Query: 94  ALATQQAYYPEYKYTSILRSDPTWQEESQSSGEDQWQSETVYKSRSYDKHKGACEVRQQV 273
           AL T++    +Y   S L +  TWQ+E+ + G     S T   S  Y  H     V +Q+
Sbjct: 424 ALCTERT---DYGCGSTLTATDTWQQETYTFGNAS-NSATARPSAVYCNHWIQAPVGKQI 479

Query: 274 QF 279
           QF
Sbjct: 480 QF 481


>AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 3 protein.
          Length = 1603

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 19/114 (16%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
 Frame = +1

Query: 163  WQEESQSSGEDQWQSETVYKSRSYDKHKGACEVRQQVQFYENHGDICITTSRVPSCQSHC 342
            W  E + S    + S + Y++ +YD+ +   ++ ++    E    +C +   V  C+   
Sbjct: 1491 WNREEKKS---DYVSSSDYEN-NYDEKETENQLFKKTLIKEFSNRVCFSIEPVSECRRGL 1546

Query: 343  RAGDYKIQHVQVTCKSKLDHDFRMYKEQIKKGQNPEVSGIP--SVKQFKVPVTC 498
             +     + ++ TC  +   + R + ++ ++    ++   P   V+  K+P  C
Sbjct: 1547 ESEKTSNEKIRFTCMPRHSKNARRFLKEAREQTVADLVDFPVSFVESVKIPTAC 1600


>Z82265-7|CAB05171.2|  425|Caenorhabditis elegans Hypothetical
           protein F02H6.4 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 385 KSKLDHDFRMYKEQIKKGQNPEVSGIPSVKQFK 483
           + KL HD +M K  IK  Q+   SG+  +K+++
Sbjct: 279 RKKLAHDTKMLKFYIKLTQSMHDSGVSRIKEYQ 311


>Z92824-7|CAB07310.1|  156|Caenorhabditis elegans B0413.7 protein.
          Length = 156

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 49  SLNEENSDPKTQELKALATQQAYYPEYKYTSILRSDPTWQEESQ 180
           +L E   +P       L T+ A++P  K  SI+    TW  ESQ
Sbjct: 28  NLAENPENPVDLSEXPLETKPAWFPSSKGRSIVWEHXTWVAESQ 71


>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 6 protein.
          Length = 1254

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +2

Query: 287 TTAISVSQLRECPRVSRIAVLETTKYSTFK*RVNRNSTTTSACTKNRSKRARTPR 451
           TT +    + E     +  V++TT  +T K      +TTT+  T+  + +  T +
Sbjct: 787 TTTVVAENIDEVTTTEKEKVVQTTPITTEKSTTQEETTTTTTTTEKTTSKTTTEK 841


>U64609-8|AAB04605.2|  465|Caenorhabditis elegans Hypothetical
           protein T28H11.8 protein.
          Length = 465

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/71 (22%), Positives = 30/71 (42%)
 Frame = -1

Query: 494 VTGTLNCLTLGIPDTSGFWPFLICSLYMRKSWSSFDLHVT*TCCIL*SPARQCD*HEGTL 315
           +   L+ +   + D+ GFWP L+C  +   + +S  LH T    +  +P  +       +
Sbjct: 94  IMSALSSILYPLFDSLGFWPALVCRFFAGFAQAS-QLHFTNDLVLRWTPESEASFFFSIM 152

Query: 314 EVVIQISPWFS 282
               Q  P F+
Sbjct: 153 LATSQFGPLFT 163


>AC024881-9|AAK71410.1|  588|Caenorhabditis elegans Hypothetical
           protein Y97E10B.1 protein.
          Length = 588

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 49  SLNEENSDPKTQELKALATQQAYYPEYKYT 138
           SL+  +S  K +ELKA  T   YYP  K T
Sbjct: 40  SLSTISSQNKKRELKAFITSAYYYPTSKST 69


>AC006720-9|AAF60443.2|  480|Caenorhabditis elegans Hypothetical
           protein Y17G9B.1 protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 419 KNRSKRARTPRYLEYLASSNSKYR*LASLKY 511
           KNR K A  PR+ E+L   N KY+   S+K+
Sbjct: 216 KNRYKSATDPRFREFL-KENIKYKVKQSIKH 245


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 52  LNEENSDPKTQELKALATQQAYYPEYKYTSILRSDPTWQEESQSSGEDQWQ 204
           +NE + +     +  L T + + P YKY   L  + +  +  Q+SGE+Q Q
Sbjct: 260 VNEYSREKHDFVMAILKTYKEFQPTYKYHIGLNGNCSLWKWDQASGEEQVQ 310


>Z79603-5|CAB01891.1|  435|Caenorhabditis elegans Hypothetical
           protein M163.5 protein.
          Length = 435

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = +2

Query: 206 LKPSISLEATTNTRALVKLGNRCSFMRTTAISVSQLRECPRVSRIAVLETTKYSTFK*RV 385
           +KP +++E  +++  L  + N     R   I     +EC +   I   ++  YS+F   +
Sbjct: 216 IKPPLNIEPLSSSILLPPILNSAD-NRAQEIESKPEKECQKP--IPTSQSANYSSFNRHL 272

Query: 386 NRNSTTT 406
           N+NST +
Sbjct: 273 NKNSTNS 279


>Z47070-3|CAA87341.1|  528|Caenorhabditis elegans Hypothetical
           protein T09B9.4 protein.
          Length = 528

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 109 QAYYPEYKYTSILRSDPTWQEESQSSG 189
           Q  YPE+ Y  +L   PTW E + S+G
Sbjct: 91  QMRYPEF-YQFLLAEQPTWFEPAPSNG 116


>U13019-5|AAC24444.1|  994|Caenorhabditis elegans Hypothetical
           protein T12A2.5 protein.
          Length = 994

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -3

Query: 411 AEVVVEFRFTRHLNVLYFVVSSTAMRLTRGHSRSCDTDIAVVL 283
           AE + +    + LNVLYF ++   + LT G +++ DT   ++L
Sbjct: 533 AEALADLNQIKDLNVLYFYIALDELYLTGGFAKT-DTINNIIL 574


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 1/132 (0%)
 Frame = +1

Query: 58   EENSDPKTQELKALATQ-QAYYPEYKYTSILRSDPTWQEESQSSGEDQWQSETVYKSRSY 234
            ++ + P+   L++ ++Q Q    + +  S+  S  T+Q++ Q   +     +T    R Y
Sbjct: 1309 QQQAPPQPSYLRSQSSQSQPQQQQQQQASMSMSQATYQQQHQQQNQMHHHHQTSRMQRGY 1368

Query: 235  DKHKGACEVRQQVQFYENHGDICITTSRVPSCQSHCRAGDYKIQHVQVTCKSKLDHDFRM 414
                 A    QQ Q   +  D     +R+ + Q H  AGD          +    H+   
Sbjct: 1369 GDLWNAAPGMQQQQQNSSQQDY---PNRMMAPQ-HNGAGDLASSQGFSMGQQSPWHNPPT 1424

Query: 415  YKEQIKKGQNPE 450
             ++Q++ GQ P+
Sbjct: 1425 QQQQLRGGQAPQ 1436


>AF106589-1|AAC78228.2|  629|Caenorhabditis elegans Abnormal
           acetylcholinesterase protein2 protein.
          Length = 629

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 205 TAIDPHRRTVILLAKLGQSVGCLCTYILGSKLVV 104
           +A DPH R +I      +S+     Y  GSKLV+
Sbjct: 384 SAEDPHNRALITRDHYEESMRAFMPYFAGSKLVL 417


>AF025378-1|AAC14016.2|  629|Caenorhabditis elegans
           acetylcholinesterase protein.
          Length = 629

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 205 TAIDPHRRTVILLAKLGQSVGCLCTYILGSKLVV 104
           +A DPH R +I      +S+     Y  GSKLV+
Sbjct: 384 SAEDPHNRALITRDHYEESMRAFMPYFAGSKLVL 417


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.130    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,419,841
Number of Sequences: 27780
Number of extensions: 262988
Number of successful extensions: 847
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)

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