Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311E08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    46   3e-07
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   3.3  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              21   5.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 45.6 bits (103), Expect = 3e-07
 Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 3/166 (1%)
 Frame = +1

Query: 13   LVDKPELYAAAYSLNEENSDPKTQEL-KALATQQAYYPEYKYTSILRSDPTWQEESQSSG 189
            L  KPE + A+Y+L     +  +  + K+L        E      + SD      S+S  
Sbjct: 1616 LFRKPEHFVASYALISNQCEGDSLNVAKSLQDHDCIRQERTQQRNVISD------SESGR 1669

Query: 190  EDQWQSETVYKSRSYDKHKGACEVRQQVQFYENHGDICITTSRVPSCQSHCRAGDYKIQH 369
             D   S   Y   + +KH   C + +  Q  E    IC T   V SC S C A + K + 
Sbjct: 1670 LDTEMSTWGYH-HNVNKH---CTIHR-TQVKETDDKICFTMRPVVSCASGCTAVETKSKP 1724

Query: 370  VQVTCKSKLDHDFRMYKEQIKKGQNPEVSGIP--SVKQFKVPVTCQ 501
             +  C  K +   ++ K++I+KG NP++S  P  + ++  VP  C+
Sbjct: 1725 YKFHCMEKNEAAMKL-KKRIEKGANPDLSQKPVSTTEELTVPFVCK 1769


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 52  LNEENSDPKTQELKALAT 105
           LNEE  D + Q+L+ LAT
Sbjct: 355 LNEEFRDLRLQDLRPLAT 372


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 73  PKTQELKALATQQAYYPEYKYTSILRSDPTWQE 171
           P T ++K +A  +  Y  +   SIL S  T+Q+
Sbjct: 97  PSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQ 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.130    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,494
Number of Sequences: 438
Number of extensions: 3182
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)