Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311E07f
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    28   0.77 
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    27   1.8  
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    25   5.4  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   5.4  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    25   5.4  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    24   9.5  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    24   9.5  

>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 27.9 bits (59), Expect = 0.77
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +1

Query: 241 EEFEEDRADGAKVKSVCTFEGNTLKQVQKXPDGLEVTYVREFGPEEMKAVMTAKDV 408
           EE  ED   G    + CT + N    + +  D +E   +   GP E++  M+  DV
Sbjct: 220 EETNEDDLLGQS-PTACTTDANIDNSIPENSDKIEEVSIESSGPSEVEDEMSEYDV 274


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 191 KSYSSPSLRSSTVGVTALAALRVIRPTPMVFMNSSKFSEEVILY 60
           +S+  P +      +T LAA    R    V  N +KFS + +LY
Sbjct: 238 QSHEDPIIEPDNKFLTELAAYFYFRQQGWVVKNGTKFSVDFLLY 281


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 265 DGAKVKSVCTFEGNTLKQVQKXPDGLEVTY 354
           D  +++++C+F+   LK   + P+   VTY
Sbjct: 313 DTERLENLCSFQSTILKHALQFPNCRHVTY 342


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 3    NLSLKSIKLIYKNGIRRXEIQDDF 74
            NL L   +++++NGI     QDDF
Sbjct: 1815 NLQLGGTQVMHRNGISHLTSQDDF 1838


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 61  YKMTSSENFDEFMKTIGVGLITR 129
           +K++S++  DEF++    G+ITR
Sbjct: 140 FKLSSTKALDEFLEAKEAGIITR 162


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 315  LEGVAFECAYGFHLSTVSAVLFELF 241
            L+GV     Y FH S  +  +F LF
Sbjct: 1449 LDGVEMNYLYAFHFSISNRFVFSLF 1473


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +1

Query: 172 DGDEYDLVTS--STFKTTEMKFKPGEEFEEDRADGAK 276
           DG   D++     + K+ E  F PG     D+A G K
Sbjct: 271 DGMSIDVIDKIIQSLKSEEFNFTPGRRILIDKASGGK 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,706,880
Number of Sequences: 5004
Number of extensions: 31014
Number of successful extensions: 76
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)