Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311E07f
(453 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 28 4.0
10_08_0308 + 16660751-16661450,16661656-16661819,16662615-166628... 27 7.1
09_03_0081 + 12163213-12164088 27 7.1
09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242 27 7.1
07_03_1455 - 26659480-26659758,26659907-26660149 27 7.1
03_02_0254 + 6862762-6863663,6863994-6864241,6864323-6864465,686... 27 7.1
04_04_0456 - 25355409-25355751,25356047-25356205,25356317-253565... 27 9.3
02_01_0436 - 3166764-3166949,3167115-3167258,3167343-3167469,316... 27 9.3
01_07_0383 - 43195095-43195322,43195408-43195638,43196134-431964... 27 9.3
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 154 TVELRKDGDEYDLVTSSTFKTTEMKFKPGEEFEED 258
T +L+K+ DEY + ++S + TE K ++FEE+
Sbjct: 477 TAQLKKEIDEYRMRSNSLSEETEDLRKQRQKFEEE 511
>10_08_0308 +
16660751-16661450,16661656-16661819,16662615-16662800,
16663297-16663533
Length = 428
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 105 HRRGSDHPQSRQRCHPDRGAP 167
HRRG RQRC RGAP
Sbjct: 87 HRRGPSLVPGRQRCGGARGAP 107
>09_03_0081 + 12163213-12164088
Length = 291
Score = 27.1 bits (57), Expect = 7.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 279 EIRMHIRRQHPQASPEGPR 335
+ R+H++RQ QA P GPR
Sbjct: 66 QARLHLQRQAAQAGPLGPR 84
>09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242
Length = 509
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Frame = -1
Query: 327 LLDLLEGVAFECAYGFHL--STVSAVLFELFA 238
L+D+L G+ + +GFHL S + A++ ++FA
Sbjct: 274 LVDVLIGLQGKGGFGFHLDNSKIKAIILDMFA 305
>07_03_1455 - 26659480-26659758,26659907-26660149
Length = 173
Score = 27.1 bits (57), Expect = 7.1
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +1
Query: 154 TVELRKDGDEYDLVTSSTFKTTEMKFKPGEEFEE 255
TV LR E L+TSS TE K GEEF++
Sbjct: 122 TVSLRPP--ELPLLTSSRLNPTETPHKEGEEFKK 153
>03_02_0254 +
6862762-6863663,6863994-6864241,6864323-6864465,
6864532-6864570,6865403-6865501
Length = 476
Score = 27.1 bits (57), Expect = 7.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 159 HGRGDSVGGFAGDQTHADGLH 97
HG G + G F G + H DG+H
Sbjct: 271 HGFGRTNGQFLGGRAHGDGVH 291
>04_04_0456 -
25355409-25355751,25356047-25356205,25356317-25356513,
25356602-25356794,25357044-25358287
Length = 711
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 96 HEDHRRGSDHPQSRQRCHPDR 158
H HRRG H Q + HP R
Sbjct: 276 HHSHRRGIRHKQQQHHQHPRR 296
>02_01_0436 -
3166764-3166949,3167115-3167258,3167343-3167469,
3167746-3167825,3167933-3168184,3168271-3168399,
3169039-3169088,3169221-3169323,3169429-3169548,
3169725-3169786,3169873-3169915,3169995-3170183,
3170299-3170367,3170460-3170539,3170648-3170723
Length = 569
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1
Query: 429 LVDSGASHVLSCHHSFHLLRAEFPDVSDFKTV 334
L+D+ +HL +FPDV FK V
Sbjct: 498 LIDNLGDEFAKVQREYHLPAGDFPDVEHFKEV 529
>01_07_0383 -
43195095-43195322,43195408-43195638,43196134-43196454,
43196512-43196589,43196664-43197727,43197813-43198503,
43198743-43199541,43200010-43200158,43200159-43200286,
43200389-43200494,43200835-43200843,43201332-43201821,
43201896-43202554,43203759-43203851,43204044-43204196,
43205092-43205194,43205376-43205467,43206229-43206306,
43206987-43207049,43207339-43207512
Length = 1902
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 206 VEEVTKSYSSPSLRSSTVGVTALAAL-RVIRPTPMVFMNSSKFSEEVI 66
+E+ + S + + + V L+ L + RP P+ NS K SEE +
Sbjct: 625 IEQSVPAIKSMIQKDTPIVVKLLSVLVEIFRPVPLFLKNSQKESEESV 672
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,517,753
Number of Sequences: 37544
Number of extensions: 227650
Number of successful extensions: 628
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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