Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311E04f
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   124   4e-30
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   124   6e-30
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    29   0.30 
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    29   0.30 
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    29   0.30 
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    29   0.30 
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    28   0.69 
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    26   2.1  
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    26   2.1  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    25   3.7  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    25   4.8  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.4  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  124 bits (300), Expect = 4e-30
 Identities = 57/98 (58%), Positives = 72/98 (73%)
 Frame = +1

Query: 1   DRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVS 180
           DRLQTGMR AFGKP G VARV IGQ +MSVR+ D  +A  IEALRR ++KFPG+Q+I VS
Sbjct: 109 DRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVS 168

Query: 181 KKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 294
           KKWGF++Y RDE+ + R  G +  DGC  ++  + G L
Sbjct: 169 KKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  124 bits (299), Expect = 6e-30
 Identities = 57/98 (58%), Positives = 72/98 (73%)
 Frame = +1

Query: 1   DRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVS 180
           DRLQTGMR AFGKP G VARV IGQ +MSVR+ D  +A  IEALRR ++KFPG+Q+I VS
Sbjct: 109 DRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVS 168

Query: 181 KKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 294
           KKWGF++Y RDE+ + R  G +  DGC  ++  + G L
Sbjct: 169 KKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 29.1 bits (62), Expect = 0.30
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 249 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 115
           S+A  F ++L    FI C +P+L Y+  +  G  +   +  + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 29.1 bits (62), Expect = 0.30
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 249 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 115
           S+A  F ++L    FI C +P+L Y+  +  G  +   +  + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 29.1 bits (62), Expect = 0.30
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 249 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 115
           S+A  F ++L    FI C +P+L Y+  +  G  +   +  + DL
Sbjct: 235 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 279


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 29.1 bits (62), Expect = 0.30
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 249 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 115
           S+A  F ++L    FI C +P+L Y+  +  G  +   +  + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 27.9 bits (59), Expect = 0.69
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +1

Query: 10  QTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSK 183
           +T M    G  +   AR+ IG+ +  +      K     AL++A F  PG+ +I V +
Sbjct: 124 ETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKELAEHALKQAAFHLPGKYEIIVKQ 181


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +2

Query: 89  CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAAS 247
           C L+T         C +  + SP+++RS Y  +G++ S  +  +     RAA+
Sbjct: 17  CLLITLSIILLGWQCVLLYNHSPEIQRSVYTLTGLAPSSKMAFVTMLTVRAAN 69


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 19/75 (25%), Positives = 31/75 (41%)
 Frame = +2

Query: 89  CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASLMTAALC 268
           C + T  R  S RLC        D++  +Y  S    + NV+++  C K    L + +  
Sbjct: 160 CLIATAYRSSSIRLC--------DMQSGSYTHSLSGHTGNVLAVDWCPKNEFVLASGSAD 211

Query: 269 STARNMDLSTLGGRF 313
            T R  D+  +   F
Sbjct: 212 GTCRLWDIRKVSSSF 226


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 119 SSRLCAVPSSSSPDVKRSTYQRSGVS 196
           SS +   P+S SPD+K   YQ  G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +2

Query: 56  HVFALDSPSC--PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRS 226
           H+ +LDS S   P AL      +  +   VPS SSP VK ++    G S S    SLRS
Sbjct: 422 HIPSLDSSSLLTPLALPNKKAFQPVKF-RVPSFSSPLVKPASSSSFGRSHSHLGTSLRS 479


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 51   STLRLAKRTTHPSLEP 4
            +T +LAKR T PSL P
Sbjct: 957  TTTKLAKRITQPSLSP 972


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,768,972
Number of Sequences: 5004
Number of extensions: 33030
Number of successful extensions: 94
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)