Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311E04f
(422 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 128 1e-30
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 128 1e-30
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 124 3e-29
07_03_1509 - 27246721-27247350 29 1.2
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 2.7
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 28 2.7
02_01_0254 - 1669461-1669590,1669833-1672318 28 2.7
10_08_0840 + 20945899-20946085,20946369-20946478,20946857-20947369 28 3.6
09_06_0319 - 22293869-22293906,22294539-22295808 27 4.7
08_02_0567 + 18769742-18769790,18769928-18771351 27 4.7
11_01_0053 - 401578-401824,401996-402079,402201-402388,402713-40... 27 6.2
09_03_0192 + 13344558-13344942,13345038-13345591 27 6.2
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 27 6.2
01_06_0212 + 27575406-27575604,27575723-27576241,27576371-27576387 27 6.2
10_08_1058 + 22608852-22609172,22609257-22610651 27 8.2
08_02_0451 + 17297293-17297793,17297866-17298130,17298215-172984... 27 8.2
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 128 bits (310), Expect = 1e-30
Identities = 62/98 (63%), Positives = 72/98 (73%)
Frame = +1
Query: 1 DRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVS 180
DRLQTGMRGAFGKPQGT ARV IGQ ++SVR + EALRRAKFKFPGRQKI S
Sbjct: 109 DRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHS 168
Query: 181 KKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 294
+KWGFTK+ R+E+ KL+ EGR+ +DG Q HG L
Sbjct: 169 RKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 128 bits (310), Expect = 1e-30
Identities = 60/96 (62%), Positives = 71/96 (73%)
Frame = +1
Query: 1 DRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVS 180
DRLQTGMRGAFGKP GT ARVRIGQ ++SVR D A EALRRAKFKFPGRQ++ S
Sbjct: 416 DRLQTGMRGAFGKPTGTCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRVIFS 475
Query: 181 KKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHG 288
KWGFT+++RDE+ KL+ EGR+ DG + HG
Sbjct: 476 AKWGFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 124 bits (299), Expect = 3e-29
Identities = 58/86 (67%), Positives = 66/86 (76%)
Frame = +1
Query: 1 DRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVS 180
DRLQTGMRGAFGKPQGT ARV IGQ ++SVR EALRRAKFKFPGRQKI S
Sbjct: 105 DRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIES 164
Query: 181 KKWGFTKYERDEFEKLREEGRLANDG 258
+KWGFTK+ RDE+ +L+ EGR+ DG
Sbjct: 165 RKWGFTKFSRDEYVRLKSEGRIMPDG 190
>07_03_1509 - 27246721-27247350
Length = 209
Score = 29.5 bits (63), Expect = 1.2
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +2
Query: 68 LDSPSCPCALVTGGRHRSSRL---CAVP--SSSSPDVKRSTYQRSGVS 196
L P PC RH RL +P +SSSP+++R+T R+G S
Sbjct: 132 LQPPLSPCLSAGRRRHHLPRLHDAALIPGITSSSPELRRNTVARAGFS 179
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 2.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 34 GKPQGTVARVRIGQPIMSVRSSD 102
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 28.3 bits (60), Expect = 2.7
Identities = 10/42 (23%), Positives = 26/42 (61%)
Frame = -3
Query: 339 RLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKL 214
+++ +D + +LPP ++ + +V+HN + + + + LLK+
Sbjct: 685 QIFFDDRNTSLPPDTRKAAYLSVMHNVSSTNRSG-YDALLKI 725
>02_01_0254 - 1669461-1669590,1669833-1672318
Length = 871
Score = 28.3 bits (60), Expect = 2.7
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = -3
Query: 348 VLIRLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKLITFILCETPLL*YVD 169
V +RL++ S PPS + F A + AA +AAL LL+ + + P L +
Sbjct: 24 VALRLFLHLTSAASPPSPHSTSFLARILAAAAAHDAALLPSLLRHLLSLPDPAPHLLALL 83
Query: 168 LLTSGELELGTAQSLD---DLCLPP 103
+S L L SL LC P
Sbjct: 84 SSSSSPLRLPLGFSLSAFRSLCALP 108
>10_08_0840 + 20945899-20946085,20946369-20946478,20946857-20947369
Length = 269
Score = 27.9 bits (59), Expect = 3.6
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 109 KAQVIEA-LRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEH 285
KA +I+ RR + K+PG QK+ + G K +A+DG ++Q +
Sbjct: 151 KAGIIDMQFRRVRCKYPGGQKVTFHVEKGSNPNYLAVLVKF-----VADDGDVIQMDLQE 205
Query: 286 GPLDAWRKVQ 315
L AWR ++
Sbjct: 206 AGLPAWRPMK 215
>09_06_0319 - 22293869-22293906,22294539-22295808
Length = 435
Score = 27.5 bits (58), Expect = 4.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 34 GKPQGTVARVRIGQPIMSVRSSD 102
G PQ T+ R+ +G P +S+ S D
Sbjct: 343 GTPQPTLERLHVGHPTLSLHSDD 365
>08_02_0567 + 18769742-18769790,18769928-18771351
Length = 490
Score = 27.5 bits (58), Expect = 4.7
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +1
Query: 19 MRGAFGKPQG--TVARVRIGQPIMSVRSSDRW-KAQVIEALRRAKFKFPGRQKI 171
MR G+ G A +RI + I + ++++ +AQV+EA RR F+ PGR ++
Sbjct: 24 MRTNGGEQMGGSEAAHIRIDEIIRRLDAAEKEAQAQVVEA-RREIFRVPGRHRL 76
>11_01_0053 -
401578-401824,401996-402079,402201-402388,402713-402779,
402905-403105,403712-403789,404358-404374
Length = 293
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 163 QKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPE 282
+KIY S WGFT E++ + +E + I + +PE
Sbjct: 2 EKIYRSHLWGFTANEKEAYSGENDERQQILQLIIEEKQPE 41
>09_03_0192 + 13344558-13344942,13345038-13345591
Length = 312
Score = 27.1 bits (57), Expect = 6.2
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +1
Query: 133 RRAKFKFPGRQKIY----VSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLDA 300
R A+ ++P +Y +++K F +D LR+ A D + Y+ GPLDA
Sbjct: 92 RLARSEYPKHHYVYPMAGLNEKVDFLCKAKDLMHHLRKSK--ATDWALGPYKSVFGPLDA 149
Query: 301 WRKVQAEILNV 333
+ EIL+V
Sbjct: 150 QTQDGMEILDV 160
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 27.1 bits (57), Expect = 6.2
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -1
Query: 80 MGCPMRTRATVP*GLPNAPRIPVWS 6
+ CP+ + + VP LP++P P++S
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYS 1649
>01_06_0212 + 27575406-27575604,27575723-27576241,27576371-27576387
Length = 244
Score = 27.1 bits (57), Expect = 6.2
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -3
Query: 165 LTSGELELGTAQSLDDLCLPPVTRAHGHDGLSNANTCYSTLRLAKRTTHP 16
L+SGEL +G + D+ LPPV G G S+A S + +R P
Sbjct: 134 LSSGELLIGASSPYDEPPLPPVHSRRG-AGRSSAVPRLSAPDIGRRYYEP 182
>10_08_1058 + 22608852-22609172,22609257-22610651
Length = 571
Score = 26.6 bits (56), Expect = 8.2
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +2
Query: 224 SCVKRAASL--MTAALCSTARNMDLSTLGGRFRL 319
+CV AASL MT MD GGRFR+
Sbjct: 343 TCVLYAASLGQMTTTFIQQGMAMDTRVFGGRFRV 376
>08_02_0451 +
17297293-17297793,17297866-17298130,17298215-17298410,
17298437-17298864,17298923-17299200,17299298-17299588
Length = 652
Score = 26.6 bits (56), Expect = 8.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 224 SCVKRAASLMTAALCSTARNMDLSTLGGRFRLRS 325
S +KR A + AA CST R M G + RLR+
Sbjct: 548 SAIKRLAVRILAAHCSTERTMRACLDGFKNRLRA 581
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,192,280
Number of Sequences: 37544
Number of extensions: 278691
Number of successful extensions: 705
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -