Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311E04f
(422 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041) 84 5e-17
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.52
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05) 28 3.7
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31) 28 3.7
SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28) 27 4.8
SB_50109| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-10) 27 4.8
SB_18608| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002) 27 8.5
SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_45735| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
Length = 50
Score = 83.8 bits (198), Expect = 5e-17
Identities = 40/50 (80%), Positives = 43/50 (86%)
Frame = +1
Query: 19 MRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQK 168
MRGAFGKPQGTVARV IGQ I+S+R+ D KA IEALRRAKFKFPGRQK
Sbjct: 1 MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50
>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1278
Score = 30.7 bits (66), Expect = 0.52
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -3
Query: 177 YVDLLTSGELELGTAQSLDDLCLPPVTRAHGHDGLSNANT--CYSTLRLAKRTT 22
Y + ++G + T D+C+P + HGH +ANT CY + A +T
Sbjct: 68 YAESCSAGHYVVRTGNPFTDICIP--CQCHGHSDQCDANTGICYVRIYTADLST 119
>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2077
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = +1
Query: 25 GAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKW 189
G G+P G+V + +++++ +W + E++ A + FP S+ W
Sbjct: 1109 GVDGRPSGSVEILGSRDSFVAIQNGRQWMLDIEESISIAFYVFPNNSLGNTSRNW 1163
>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
Length = 726
Score = 27.9 bits (59), Expect = 3.7
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 27 CVWQASGYCSTCSHWTAHHV 86
C W +G C C HW HV
Sbjct: 79 CYWIRTGCCHLCWHWRPLHV 98
>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
Length = 883
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +2
Query: 56 HVFALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMS 217
HV A P P + + + +S A+ +SS+P + S Q + + + N S
Sbjct: 261 HVIANQHPPAPVSQLQSNSNNASAARAITTSSNPSISTSVLQGNLSTNARNTAS 314
>SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28)
Length = 434
Score = 27.5 bits (58), Expect = 4.8
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +1
Query: 175 VSKKWGFTKYE---RDEFEKLREEGRLANDGCIVQYRPEHGPLDAW 303
V K W T +E + LR R D CI+ Y+ ++GPL W
Sbjct: 390 VFKDWNCTYHELLIKANLSTLRN--RRLQDICILMYKVKNGPLPIW 433
>SB_50109| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-10)
Length = 315
Score = 27.5 bits (58), Expect = 4.8
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = -3
Query: 351 NVLIRLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKLITFILC 196
+V +RL++E + L++P + + R VLH + +S+ L LIT ++C
Sbjct: 99 DVSMRLFLEVI-LSVPFLISNDLHRLVLHQQSALSQKVLI-----LITTVVC 144
>SB_18608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 27.1 bits (57), Expect = 6.4
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 70 GQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWG 192
G + +VR +DR K ++++AL +P + V+ K+G
Sbjct: 516 GGGVNTVRLTDRTKTEMLKALWDVSVSYPKGHAVLVAYKYG 556
>SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)
Length = 458
Score = 26.6 bits (56), Expect = 8.5
Identities = 25/92 (27%), Positives = 37/92 (40%)
Frame = +2
Query: 41 LRVL*HVFALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSL 220
LR+ H+ L +P+C V SS + + S D K ++ S S
Sbjct: 97 LRLTSHIRIL-APACGAISVAVSGAISSLVFITYTEKSKDAKDRYFE----SHKSQFDSY 151
Query: 221 RSCVKRAASLMTAALCSTARNMDLSTLGGRFR 316
++ + S M A+C TLGGRFR
Sbjct: 152 FRTIRYSYSPMDIAVCVVGSLFVFKTLGGRFR 183
>SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1005
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -3
Query: 138 TAQSLDDLCLPPVTRAHGHDGLSN 67
TA ++D C+P ++RA G DGLS+
Sbjct: 104 TAFAVD--CIPRISRAQGFDGLSS 125
>SB_45735| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 484
Score = 26.6 bits (56), Expect = 8.5
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 312 NLPPSVERSMFRAVLHNAAVISEAALFTQLLKLITFILCETPLL*Y 175
++PP E + LHN A+++ TQ L +L E L Y
Sbjct: 195 DMPPRAEEELDAVSLHNQALMNMETAPTQYYDLAADVLAENAQLTY 240
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,292,411
Number of Sequences: 59808
Number of extensions: 296430
Number of successful extensions: 859
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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