Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311D12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 259 2e-70
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 258 3e-70
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 29 0.42
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 29 0.42
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 29 0.42
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 29 0.42
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 28 0.73
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 3.0
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 26 3.0
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.9
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 3.9
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 3.9
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 25 5.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 5.2
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 6.8
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 6.8
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 259 bits (634), Expect = 2e-70
Identities = 117/169 (69%), Positives = 140/169 (82%)
Frame = +1
Query: 1 IRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMR 180
IRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYLVK GKD FH+R+R
Sbjct: 31 IRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVR 90
Query: 181 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIE 360
HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D +A IE
Sbjct: 91 AHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATAIE 150
Query: 361 ALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQY 507
ALRR ++KFPG+Q+I VSKKWGF++Y RDE+ + R G + DGC ++
Sbjct: 151 ALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKF 199
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 258 bits (633), Expect = 3e-70
Identities = 117/169 (69%), Positives = 140/169 (82%)
Frame = +1
Query: 1 IRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMR 180
IRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYLVK GKD FH+R+R
Sbjct: 31 IRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVR 90
Query: 181 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIE 360
HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D +A IE
Sbjct: 91 AHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIE 150
Query: 361 ALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQY 507
ALRR ++KFPG+Q+I VSKKWGF++Y RDE+ + R G + DGC ++
Sbjct: 151 ALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKF 199
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.42
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 483 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 349
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.42
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 483 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 349
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 29.1 bits (62), Expect = 0.42
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 483 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 349
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 235 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 279
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.42
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 483 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 349
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 28.3 bits (60), Expect = 0.73
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Frame = +1
Query: 181 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 348
L P R+ C G GK +G AR+ IG+ + + K
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158
Query: 349 QVIEALRRAKFKFPGRQKIYVSK 417
AL++A F PG+ +I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 26 RERPLTTFHCACTWCPTNMNS 88
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 323 CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAAS 481
C L+T C + + SP+++RS Y +G++ S + + RAA+
Sbjct: 17 CLLITLSIILLGWQCVLLYNHSPEIQRSVYTLTGLAPSSKMAFVTMLTVRAAN 69
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 285 STLRLAKRTTHPSLEPISSS 226
+T +LAKR T PSL P S+
Sbjct: 957 TTTKLAKRITQPSLSPARST 976
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 22 KKRATVDDFPLCVHLVSDEYEQLSSEALEAG 114
+KRA +D LC+ +S + E ++ +LE+G
Sbjct: 64 EKRAALDTLRLCLKRISPDAELVAFGSLESG 94
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 3.9
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +1
Query: 13 DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 156
++ KKRA DD + +VS EYE L SS+ ++ N KY+ KN K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 353 SSRLCAVPSSSSPDVKRSTYQRSGVS 430
SS + P+S SPD+K YQ G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 154 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 258
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.0 bits (52), Expect = 6.8
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 290 HVFALDSPSC--PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRS 460
H+ +LDS S P AL + + VPS SSP VK ++ G S S SLRS
Sbjct: 422 HIPSLDSSSLLTPLALPNKKAFQPVKF-RVPSFSSPLVKPASSSSFGRSHSHLGTSLRS 479
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 111 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTD 1
CL L L + H++ ++W+ +N R LL + ED +
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVE-EDAE 975
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,306,933
Number of Sequences: 5004
Number of extensions: 47857
Number of successful extensions: 182
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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