Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311D07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    29   0.32 
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    27   1.7  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    26   3.0  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   5.2  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   6.8  
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    25   9.0  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    25   9.0  
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    25   9.0  

>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 19/79 (24%), Positives = 36/79 (45%)
 Frame = +2

Query: 74  EKISLSKLTFDLATMSLFDIFGDHLTRQAVKNVSRQPLHNIENMGKVVSAGPTKPNEPTK 253
           E +  SKL        + ++ G H T +A +N     L + +N   ++S+  TK +E  K
Sbjct: 703 EALRFSKLEAKNLREVIDNLKGKHETLEAQRNDLHSSLSDAKNTNAILSSELTKSSEDVK 762

Query: 254 KGETKKSFLSNTGKAIQST 310
           +       L+   KA++ +
Sbjct: 763 RLTANVETLTQDSKAMKQS 781


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 140 LQKYQTETLWLNRRLISIDXXXXXXXXXXXFNEFQTATKVQCSLIF 3
           L++ + E  W +  L SID            NE  T+ K  C+L F
Sbjct: 225 LKRDKDEKTWSSNELFSIDDLRAELSCSYVINEVSTSDKQFCALAF 270


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 214 YFAHVFYIMQRLPGNIFHG 158
           Y  HV  ++QR PG +F G
Sbjct: 428 YAGHVVAVLQRAPGQVFSG 446


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +2

Query: 149 TRQAVKNVSRQPL--HNIENMGKVVSAGPTKPNEPTKKGETKKSFLSN 286
           T  + KN + Q +  H   +  K    GP KP E    G+T  SF  +
Sbjct: 370 TNVSTKNRNNQTVGEHPYVDDNKKKKKGPAKPKEKATLGKTVNSFFGS 417


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 269  KSFLSNTGKAIQSTPSRKVFTPRAVNVGSLIYTDED 376
            K+F+S     I  TP RKV    A ++ +    DED
Sbjct: 1589 KNFISQRKSTIVFTPDRKVAKQLAFDLVTFSMADED 1624


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/93 (19%), Positives = 37/93 (39%)
 Frame = +2

Query: 59  NNDDIEKISLSKLTFDLATMSLFDIFGDHLTRQAVKNVSRQPLHNIENMGKVVSAGPTKP 238
           ++D+IE I L K      T    ++  D+L  +  KN+  Q     E++ K +   P K 
Sbjct: 398 DDDEIEDILLDKDEILTKTQVWMELNKDYLAEEEAKNLKLQ-----EDLKKGIVRQPRKR 452

Query: 239 NEPTKKGETKKSFLSNTGKAIQSTPSRKVFTPR 337
                +  T         ++ +    ++ F+ +
Sbjct: 453 RRYRPRDSTSDGIADTAAESAKEMMQQRAFSKK 485


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/53 (26%), Positives = 21/53 (39%)
 Frame = +2

Query: 227 PTKPNEPTKKGETKKSFLSNTGKAIQSTPSRKVFTPRAVNVGSLIYTDEDGDK 385
           P +     + G+   SFL   G            TP ++  G + Y+DE G K
Sbjct: 101 PLRSGTRVQIGQISFSFLLPEGSEEDGHLKETGITPLSLQQGKIAYSDEFGGK 153


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 104 DLATMSLFD-IFGDHLTRQAVKNVSRQPLHNIENMGK 211
           D +++ LF   + DH T   +K V +Q  + +E MG+
Sbjct: 33  DASSLHLFTPTWRDHATNTIIKFVPQQVAYVVERMGR 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,745
Number of Sequences: 5004
Number of extensions: 42822
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)