Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311D07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0705 - 5259949-5263887,5266207-5266509                           30   1.3  
08_02_1412 + 26893221-26893613,26894205-26894587,26894697-268948...    28   5.2  
04_04_1158 - 31342934-31343272,31343508-31343658,31343745-313439...    28   5.2  
04_04_0176 - 23329589-23331043                                         27   6.9  
08_01_0162 - 1302497-1302787,1304608-1305271,1305380-1306927,130...    27   9.1  

>02_01_0705 - 5259949-5263887,5266207-5266509
          Length = 1413

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/30 (43%), Positives = 23/30 (76%)
 Frame = +3

Query: 396 LKKLSSPNLSTMIIIKEIYLTLFHCRNLVT 485
           L+ L++ +LS  ++ ++I + LF+CRNLVT
Sbjct: 661 LRNLTALSLSGNMLSEDIPIQLFNCRNLVT 690


>08_02_1412 +
           26893221-26893613,26894205-26894587,26894697-26894814,
           26894998-26895192,26895318-26895542,26895773-26895832,
           26895956-26896036,26896142-26896547,26896730-26896965
          Length = 698

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +2

Query: 317 RKVFTPRAVN----VGSLIYTDEDGDKGCTFEEIEFTKPKHYDNYQRDLFDFIPLSEP 478
           ++VFTP  +     +G +IY        C FE   +T+P   +  Q ++F F P+  P
Sbjct: 534 QRVFTPSVIEPSFGIGRIIY--------CLFEHSFYTRPSKSEEEQLNVFRFPPIVAP 583


>04_04_1158 -
           31342934-31343272,31343508-31343658,31343745-31343976,
           31344173-31344284,31344572-31344690,31344772-31344936,
           31345049-31345247,31345351-31345733,31345838-31345902,
           31346003-31346047,31346402-31346467,31346707-31346778,
           31346907-31346981,31347086-31347157,31347255-31347326,
           31347954-31348022,31348109-31348180,31348280-31348351,
           31348756-31348827,31349295-31349366,31349528-31349711,
           31350082-31350220
          Length = 948

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = +2

Query: 275 FLSNTGKAIQSTPSRKVFTPRAVNVGSLIYTD---EDGDKGCT--FEEIEFTKPKHYDNY 439
           ++ N+ +  QST   ++F    ++  SL Y     E+G+   T  F EIEF   K + + 
Sbjct: 441 YIFNSSRQFQSTLDPELFQTARLSPSSLRYYGIGLENGNYTVTLQFAEIEFEDTKSWKSL 500

Query: 440 QRDLFD 457
            R +FD
Sbjct: 501 GRRVFD 506


>04_04_0176 - 23329589-23331043
          Length = 484

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 458 FIPLSEPCHLKQLSPPSTPPP 520
           F+PLS P H    SPP TP P
Sbjct: 48  FLPLSPPSHY-PTSPPKTPSP 67


>08_01_0162 -
           1302497-1302787,1304608-1305271,1305380-1306927,
           1307360-1308768
          Length = 1303

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 299 IQSTPSRKVFTPRAVNVGSLIYTDEDGDKGCTFEEIEF-TKPKHYDNYQ 442
           ++   S+K  T  A N G     D+D D G T  EIE  T P+ +  Y+
Sbjct: 315 VRQRQSKKRETEEAKNGGMDGSDDDDDDDGETIVEIEMGTGPRRFPYYE 363


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,328,382
Number of Sequences: 37544
Number of extensions: 258249
Number of successful extensions: 713
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)